RetrogeneDB ID:
retro_ecab_871
Organism:
Horse ( Equus_caballus )
Location:
6:12765410-12765710 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.23 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
PCBD2
Parental gene aliases:
No gene alias available
Parental gene description:
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 [Source:HGNC Symbol;Acc:24474]

Genomic region (view in browser)





>retro_ecab_871
TCAGCACATGCTCACTGGTTGGCAGCAGAGGAAAGGGACCGCGTTATCCTTGACCTTAAA
GCAGTAGAATGATCGGAGTTAAGTGAGAGGCTGTTTACAAGGGTTAGCATTCACAAATTT
TAATCAGGCTTTTGACCTCATGTCCCAAGTTGCCCCACAGGCAGAGAAAATGAATCATCA
CCCAGAATGGCTCAATGTGTACAACAAGGTCTAGATAACTCTCACCTCACATGACTGTGG
TGGACTCACCAAAAGAGAGTGTAAGTGGCCCAGTTTACTGAAAAAGCAGCTGCTCCTGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SADAHRLTAEERTQVILDLKAAGWSELSERDAIYKEFSFKNF-NQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKRDVK-LAKFIEKA
SA.AH.L.AEER..VILDLKA...SELSER.......S...F.NQAF..MS.VA.QAEKMNHHPEW.NVYNKV.ITLTSHDCGGLTKR..K..A.F.EKA
Retrocopy
SAHAHWLAAEERDRVILDLKAVE*SELSER--LFTRVSIHKF\NQAFDLMSQVAPQAEKMNHHPEWLNVYNKV*ITLTSHDCGGLTKRECK/VAQFTEKA


Parental protein
AASV
AA.V
Retrocopy
AAPV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide