RetrogeneDB ID:
retro_ecab_875
Organism:
Horse ( Equus_caballus )
Location:
6:28563758-28564046 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.33 %
Coverage:
72.73 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_875
AGAGGTCCTGAAGAATGCCCTCACCCATCATGACCTAGGTTATGGAATCCATGTGTGCTC
ACATCCAAACATGATGAATCTATATAGAAAAACCTGGTAGAGGAACTGTGCACTGAACAC
CAAATCAACTTAATTGAGGCCGGTCACAATGAGAAACTAAAGGAATGGGTAGGCCTCTGC
AAAATCACCAGAGAAGCAAAGCCCTATAGAGCAGTTGGTTGTAGTTGTGTGGTTGTTAAG
GATCATGGTAAAGCATCTCAGGCCAAGCATGTGATCAAAAAACATTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYF
RG..E.......R....CVL.S..DE.....LVE.LC.EHQINLI....N.KL.EWVGLCKI.RE.KP...VGCSCVVVKD.GK.SQAK.VI...F
Retrocopy
RGPEECPHPS*PRLWNPCVLTSKHDESI*KNLVEELCTEHQINLIEAGHNEKLKEWVGLCKITREAKPYRAVGCSCVVVKDHGKASQAKHVIKKHF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide