RetrogeneDB ID:
retro_ecab_877
Organism:
Horse ( Equus_caballus )
Location:
6:34677650-34678112 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.56 %
Coverage:
87.01 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_877
AGCATCAACAATGGCCTGGATCAAGCAGAACAATCTGTGAAGCAGAAGACAGAACCTTTG
AAATGATCCAGTCAGAGGGGAAAAAAGAAAAAAATATACAAAAGAGTGAAAGAAGCCTCC
ATGAACTATGGGATACCATTAACAGATACAATCTACACATTATTGGAGTCCCAGAAAGAG
AAGAGAGGGAGAAAGGGGAAAAGAACTTATTTAAAGAAATAATCGCTGAGAACTTCCCAA
ATCTGGGGAGAGACATGGATGTCCAAGTTCAGGAAGCTAATAGGTCACCCCCAAAATTCA
ACTCAAAACAATCTTCTCCAAGACACATTTTAACAAAACTATCTAAAATCAAGGACAAAG
AGGATTTTAAAAGCAGCAAGAGAAAGGTAATTCTTCACATAAAAGGATATCCCCATAAGA
CTATTGGCAGATTATTTAGAAGAAACCTTGCAGACCAAGAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SINNRMDQAEET-CELEDRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANRTPNY
SINN..DQAE...CE.EDRTFE.IQSE........K...SL.E...TI...N..IIG.PE.EE..K....LFKEIIAENFPNLG...D.QV.EANR.P..
Retrocopy
SINNGLDQAEQS/CEAEDRTFEMIQSEGXXXXXIQKSERSLHELWDTINRYNLHIIGVPEREEREKGEKNLFKEIIAENFPNLGRDMDVQVQEANRSPPK


Parental protein
IKAKRPSPRHIVLKLVKVNDKEKILRAERQKKINY-KRTPIRLSADFSAETLHTKK
...K..SPRHI..KL.K..DKE......R.......K..PIRL.AD...ETL.TK.
Retrocopy
FNSKQSSPRHILTKLSKIKDKEDFKSSKRKVILHI\KDIPIRLLADYLEETLQTKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide