RetrogeneDB ID:
retro_ecab_878
Organism:
Horse ( Equus_caballus )
Location:
6:35164767-35165263 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.97 %
Coverage:
82.93 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_878
ACAGAAATTCTGAATATGAAGAACATAATTAATGAGATAAAAAATAATGTAGAAGGCATA
AAAAATAGAGCAGAACTTGTGGAGGAGAGGATTAGTGACCAAGAAGATAAACACCTAGAA
ATGTTTCTGATGGAGGAGGAGAGAGAACTATTTTTTTTCAAATGAGGAAATTATTTGAGA
AATATCTGACTTAATTAGGAAAAGTAACATAAAGATTATGGATATCCCAGAGGGATAAGA
GAGGGAGAAAGGATCAGAGAGCTTGTTCAAAGAAATAATGACTGGGAATTTCCCAAACCT
GGGGAAGAAACTAAACATACAAGTACATGAAGCCAACAGAACTCCTAATTACATTAATGC
AAAAAAACCTTCTCCAAAGCATATATTGAAACTGTCAAAAGCCAGTGACAAAAAAATATT
AAGGGAAACAAGGCAGAAGAACATAACCTTCAAAGGAACCCCTATCAGGCTTTCAGCAGA
TTTCTCAGCAGAAACC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEE-RELRLKRNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLFKEIIAGNFP
...L.MKN...E.K.N.....NRA...EE.IS..ED...E.....EE.RE.....NEEI..E.S..IRK.NI....IPEG.E..KG.ESLFKEI..GNFP
Retrocopy
TEILNMKNIINEIKNNVEGIKNRAELVEERISDQEDKHLEMF-LMEE\RENXXXXNEEII*EISDLIRKSNIKIMDIPEG*EREKGSESLFKEIMTGNFP


Parental protein
NLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANKKQQIITYKGAPIRLSADFSTET
NLGK.L.IQV.EA.R.PNYI..K..SP.HI..KL.K..DK.K.LR....K...IT.KG.PIRLSADFS.ET
Retrocopy
NLGKKLNIQVHEANRTPNYINAKKPSPKHIL-KLSKASDK-KILRETRQKN--ITFKGTPIRLSADFSAET


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide