RetrogeneDB ID:
retro_ecab_879
Organism:
Horse ( Equus_caballus )
Location:
6:35318962-35319660 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.4 %
Coverage:
86.03 %
Frameshifts:
2
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_879
AACAATTGACCTGATAAAGAGTACAAACTAAAAGTCACAAGATTGCTCACTGATCTTGGG
AGAAGAATAGATGAACTCAGTGAGAACTTCAACACAGAACAGGAAAATATAAAAAAGAAC
CAATCAGAACTGAAGAATACAATGATGAAAATGAAAAATACACTAGAGGGAATCAGCAGA
GTAGGTGACACAGAAGAACAGATCAATGATCTGGATGAAAGAGTAGAGGAAATCATCCAA
GCCAAACAGACAAAAGAAAAAAGAATTAAAAGGAATGAGAACAGTCTAAGGGACCTCCAG
GACAACATCAAGCATACTAACATCTGTATTATAGTTATCCCAGAAGAAGAAGAGAAAGAA
AGGGGCAGAGAACTTATCTGAAGAAATAATAGCTGAAAACTTCCCTAACCTGCAGAAGAA
AACAGACTTCCAGGTACAGGAAACAGAGCACGAAACAAGATAAACCCAAAGAGGCCCAGA
CTAAGACACATTATAATTAAAATGTCAAAAGTTAAAAATAGAGATCCCTAAAAGTTCTAA
GAGAAAAGCTACAACTTACAAACAAAGCAAATCCCATAAGGCTATTATTAGCTGACTTTT
CAGCAGAAACCTTACAGGCTAGAAGGGAATGGCATGATATACTCAAAGTGCTGAAGGGAA
AAAACCTATGACCAAGAATACTTTACCCGGCCAGGTTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.5
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NNLPDKEFKQKVIRMLTDLGRRMDEPSGNFNKELENIKKNQSKNKHRL-KQKTTHQLGKNICKDSIAQERTNKLDKRLEEITQADQIKEKRIKKNEDGLR
NN.PDKE.K.KV.R.LTDLGRR.DE.S.NFN.E.ENIKKNQS..K....K.K.T......I.......E..N.LD.R.EEI.QA.Q.KEKRIK.NE..LR
Retrocopy
NN*PDKEYKLKVTRLLTDLGRRIDELSENFNTEQENIKKNQSELKNTMMKMKNTLE---GISRVGDTEEQINDLDERVEEIIQAKQTKEKRIKRNENSLR


Parental protein
DLWNNIKHTNIHIIDVPEGEE-RDKGAENLFGEIIAENFPNL-RRKYPGEAQRAPNKINPKRPTPRHIIIKMSKSKDKERILNALRERQQVTYKGNPIRL
DL..NIKHTNI.II..PE.EE.R.KGAENL..EIIAENFPNL.RRK..........K....................K.R.L..LRE..Q.T.K.NPIRL
Retrocopy
DLQDNIKHTNICIIVIPE-EE\RKKGAENLSEEIIAENFPNL\RRKQTSRYRKQSTKQDKPKEAQTKTHYN*NVKS*K*RSLKVLREKLQLTNKANPIRL


Parental protein
S-ANFSAETLETRREWHDILKVLKGKNLQPRILYSARL
..A.FSAETL..RREWHDILKVLKGKNL.PRILY.ARL
Retrocopy
LLADFSAETLQARREWHDILKVLKGKNL*PRILYPARL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide