RetrogeneDB ID:
retro_ecab_88
Organism:
Horse ( Equus_caballus )
Location:
8:47144095-47144578 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.62 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_ecab_88
ATGACCAACACAAAGGGAAAGAGGAGAGGCACCCGCTATATGTTCTCTAGGCCGTTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGCAAATCTACAAGAAAGGTAATATTGTA
GACATCAAGAGAATGGGCACTGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAA
ACTCGAAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTA
AAGGGTAAGATTCTTGCCAAAAGAATTAATGTACGTATTGAGCATATTATGCACTCTAAG
AGCCGGGATAGCTTCCTGAAACGTGTGAAGGAAAATGATCCGAAAAAGAAGGAAGCCAAA
GAGAAGGGTACTTGGGTTCAACTGAAGCGCCACCCTGCTCCACCCAGAGAAGCACACTTT
GTGAGAACCAATGGAAAGGAGCCTGAGCTGCTGGAACCCATTCCCTATGAATTCATGGCA
TGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.35
SRP021940_cerebellum 0.05
SRP021940_embryo 0.29
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.21
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYM.IYKKG.IVDIK.MGTVQKGMPHKCYHGKT.RVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHI.HSK
Retrocopy
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMQIYKKGNIVDIKRMGTVQKGMPHKCYHGKTRRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIMHSK


Parental protein
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
SRDSFLKRVKEND.KKKEAKEKGTWVQLKR.PAPPREAHFVRTNGKEPELLEPIPYEFMA
Retrocopy
SRDSFLKRVKENDPKKKEAKEKGTWVQLKRHPAPPREAHFVRTNGKEPELLEPIPYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide