RetrogeneDB ID:
retro_ecab_880
Organism:
Horse ( Equus_caballus )
Location:
6:35752240-35752611 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.8 %
Coverage:
64.89 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL18
Parental gene aliases:
No gene alias available
Parental gene description:
60S ribosomal protein L18 [Source:RefSeq peptide;Acc:NP_001182442]

Genomic region (view in browser)





>retro_ecab_880
ATGGGAGTCAGCATCCGCCACAACAAAGATGGGAGGGTTAAACTTCGGCTCAAGGAGCCC
AAGAGCCTGGACATCCACCAAAGGCTGTTGGTTGAGCTGTACGGGTTTCTGGCCAGACTA
ACCAACTCTTCCTTCAACCAAGTTGTGCTGAAGAGGTTGTTAATGAGTCGCACCAACTGG
TTGCCTCTGTCTCTCTTCTGGACCATCCAGAATATGAAGCTTCCTGGCGAGGAGACAAAA
CAGCTGTGGTTGTAGGGGCTATAACGGATGATGTGCGTGTCCCTGAGGTGCCCAAATTGA
AGATGTGTGCCCTGCGTGTGAGCAGCTGCCCCTCGAGCCGCATCTTCACTGCTGGAAGCA
AGAGCCTCACC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGVDIRHNKDRKV--RRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRE-NKTAVVVGTITDDVRVQEVPK
MGV.IRHNKD..V..R.KEPKS.DI..RLLV.LY.FLAR.TNS.FNQVVLKRL.MSRTN..PLSL...I..MKLPG.E..KTAVVVG.ITDDVRV.EVPK
Retrocopy
MGVSIRHNKDGRVKLRLKEPKSLDIHQRLLVELYGFLARLTNSSFNQVVLKRLLMSRTNWLPLSLFWTIQNMKLPGEE/DKTAVVVGAITDDVRVPEVPK


Parental protein
LKVCALRVSSRARSRILKAGGKILT
LK.CALRVSS...SRI..AG.K.LT
Retrocopy
LKMCALRVSSCPSSRIFTAGSKSLT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide