RetrogeneDB ID:
retro_ecab_881
Organism:
Horse ( Equus_caballus )
Location:
6:37407745-37408233 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.05 %
Coverage:
94.71 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_881
ATGAGGGAAGAAAGCAATATATTCCAAACAGAAAAGCAAGATAAAACTCCAGAAACAGAC
CTTAATGAAATGGAGATAAGTGATTTACCCAATAAAGAGTTCAAAATAATGGTCATAAAG
ATGCCCACCAAGATCAAGAGAATAATGCATGAACAAAATGAGAATTTCAACAAGAGATAA
AAAAAAAATAAGAAAGCACCAAACAGAAATTAGAGATCTGAATACTACAGTAACTGAACT
AAAAAAGTCAATGGAGGGGTTCCACTCCAGACTAGATCAAGCAGAAGAAAATATCAGCAA
ACTCTAGGACAAGCAGTGGAACTCATTCAATGAGAAGAGCAAAACAAAATGAAATGAAAA
ACAATACTGATAGCTTAAGGAAATTATAGGACACTAACAAGTGGGCCAATGTTTGCATTA
TAGGGGTCCCAGAAGGAGAAGACAGAGAGAAAGGGGCAGGAAGCTTATTTAAAGATATAA
TGGCTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKKQGNMFQMKEQDK-PENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNK-ETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERIS
M....N.FQ...QDK.PE..LNEME.S.LPNKEF...VIKM.TK.KR.M.E...NFNK......RK.Q.E...L..T..EL....EGF.SRLD.AEE.IS
Retrocopy
MREESNIFQTEKQDKTPETDLNEMEISDLPNKEFKIMVIKMPTKIKRIMHEQNENFNK\DXXXXRKHQTEIRDLNTTVTELKKSMEGFHSRLDQAEENIS


Parental protein
ELNDRAELTQSEQQKEK-RMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEIIQE
.L.D.......E..K.K..MKN...SLR.L.D..K.AN..IIGVPEGE.R.KGA..LF..I..E
Retrocopy
KL*DKQWNSFNEKSKTK\EMKNNTDSLRKL*DTNKWANVCIIGVPEGEDREKGAGSLFKDIMAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide