RetrogeneDB ID:
retro_ecab_883
Organism:
Horse ( Equus_caballus )
Location:
6:47704123-47704481 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.4 %
Coverage:
87.86 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
ATG12
Parental gene aliases:
No gene alias available
Parental gene description:
autophagy related 12 [Source:HGNC Symbol;Acc:588]

Genomic region (view in browser)





>retro_ecab_883
ATGGCTGAGGAGCCAGCGTCCACGCTGCAGCTCCCTCCCTCAACTGCTGTGATGGCGAAG
GACCTATGGAGGTCTCCCCAGGAACAGCCACTCTGGAGCCCCCTTCTTCCCCTGCAGTCT
CCCTCGGAACAAAGGAACCTGACACCAAGAAAAAAAGTGACATCCTGCTAAAGGCTGTGG
GAGACACCCCTACCATGACGACAAAGCGGGATGTAGAGTGAACCCGAACCATCCACAGAC
TCATTGACTTCACCAAAAAGTTCCTTAAACTGTAGCCTCAGAACAGTTGTGTATCTATGT
GAATCAGTCCTGTGCCCCGTCCCCAGATGGGGAAGTTGGAACCCTCTATGAGTGTTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEEPESALQLSPSTAA-DGEGPTEVSPETATPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKL-VASE
MAEEP.S.LQL.PSTA..DGEGP.EVSP.TAT.EPPSS.AVS.GT.EP..DTKKK.DILLKAVGDTP.M.TK...VE.TRTI..LIDF.KKFLKL.VASE
Retrocopy
MAEEPASTLQLPPSTAV/DGEGPMEVSPGTATLEPPSSPAVSLGTKEP--DTKKKSDILLKAVGDTPTMTTKR-DVE*TRTIHRLIDFTKKFLKL/VASE


Parental protein
QLFIYVNQSFAPSPDQEVGTLYECF
QL.IYVNQS.APSPD.EVGTLYECF
Retrocopy
QLCIYVNQSCAPSPDGEVGTLYECF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide