RetrogeneDB ID:
retro_ecab_884
Organism:
Horse ( Equus_caballus )
Location:
6:58805687-58806224 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.18 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
MALSU1
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial assembly of ribosomal large subunit 1 [Source:HGNC Symbol;Acc:21721]

Genomic region (view in browser)





>retro_ecab_884
GACCGTGCTCGCGGCCTGCACGGGGGGCCCGGCCTGGAGGAGCTCGGGGAGCGGGCAGCC
GGCGAGGGTCGCCCCGAGTCAGGCACAGCAGATCATACTGGTCCCAAGTTTGACATCTAT
ATGCTGGTTTCACTTCTGAGGCAAGAAAATGCAAGAGACATTTGTGTGATCAAGGTTCCT
CCAGAAATGAAATACACAGATTAATTTGTGATTGGTAGTGGAACTTCCACGCGACGCTTA
CATGCCATGGCCTACTACATTGTGAAAATGTACAAATACCTGAAATGTAAAAGTGAGCCT
CATGTTAAGATCGAAGGGAAGGACACTGATGACTGGCTCTGTGTGGGCTTTGGCAGCATG
GTGATTCATTTGATGCTTCCAGAAACCAGAGAAACCTATGAATTAGAGAAATTATGGACC
CTACGTTCTTACGATGACCAGTTAGCTCAGATAGCACCTGAGACATTACCTGAAGACTTC
ATTCTTGGAATAGAAGATGACACTTCATCCCTGACTCCAGTGGAGGTCAAATGTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 1.41
SRP021940_placental_villous 1.88
SRP021940_synovial_membrane 1.69
SRP021940_testis 2.55

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DRARGLHGVTDLEELREQTAGEPRLESDTADHTGPKFDIDMLVSLLRQENARDICVIKVPPEMKYTDYFVIGSGTSTRHLHAMAYYIVKMYKYLKCKSEP
DRARGLHG...LEEL.E..AGE.R.ES.TADHTGPKFDI.MLVSLLRQENARDICVIKVPPEMKYTD.FVIGSGTSTR.LHAMAYYIVKMYKYLKCKSEP
Retrocopy
DRARGLHGGPGLEELGERAAGEGRPESGTADHTGPKFDIYMLVSLLRQENARDICVIKVPPEMKYTD*FVIGSGTSTRRLHAMAYYIVKMYKYLKCKSEP


Parental protein
HVKIEGKDTDDWLCVDFGNMVIHLMLPETRETYELEKLWTLRSYDDQLAQIAPETLPEDFILGIEDDTSSLTPVEVKCE
HVKIEGKDTDDWLCV.FG.MVIHLMLPETRETYELEKLWTLRSYDDQLAQIAPETLPEDFILGIEDDTSSLTPVEVKCE
Retrocopy
HVKIEGKDTDDWLCVGFGSMVIHLMLPETRETYELEKLWTLRSYDDQLAQIAPETLPEDFILGIEDDTSSLTPVEVKCE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide