RetrogeneDB ID:
retro_ecab_885
Organism:
Horse ( Equus_caballus )
Location:
6:59144441-59144874 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
59.86 %
Coverage:
54.17 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_885
ATGGCAGTTGGCAAAAACAACCACCTTATGAAAGGTGGCAAAAAAGGAGCCAAGAAGAAA
GGTCAATCTATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCAGTTATGTTCAATAT
AAGAAATATCAGAAAATCACAAGAGTTTGTTCACAAGAACTCAAGGAACCAAAATTGACT
GATGGCCTCAAGGGTTTCTGAAGTGAGCCTTGCTGATCTGCAGAATGACAAAGTTACCTT
TAGGAAATTCAACCTATTTACTGAGGATGTTCAAGGCAAAAACTATCTAGCTTCCATGGC
ATGGATCTTACCCATGACAAAATGTGCTCCCATGGTGAAAAAATGGCAGATCATGACTGA
AGCTCACGATGATGTCAAGACTACAGATGGTTATTTGGGTTATTTGCTTCATCTGTTCCA
GGCTGGTTTCACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVGKNKRLTKGGK-KGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTN
MAVGKN..L.KGGK.K....KV...FSKKDWYDVKAP.MFNIRNI.K..................RV.EVSLADLQND.V.FRKF.L.TEDVQGKN.L..
Retrocopy
MAVGKNNHLMKGGK\KEPRRKV-NLFSKKDWYDVKAPVMFNIRNIRKSQEFVHKNSRNQN*LMASRVSEVSLADLQNDKVTFRKFNLFTEDVQGKNYLAS


Parental protein
FHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL---LRLFCVGFT
.....L...K...MVKKWQ.M.EAH.DVKTTDGYL...L.LF..GFT
Retrocopy
MAWI-LPMTKCAPMVKKWQIMTEAHDDVKTTDGYLGYLLHLFQAGFT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide