RetrogeneDB ID:
retro_ecab_887
Organism:
Horse ( Equus_caballus )
Location:
6:68560003-68560641 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.44 %
Coverage:
86.89 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SFR1
Parental gene aliases:
No gene alias available
Parental gene description:
SWI5-dependent recombination repair 1 [Source:HGNC Symbol;Acc:29574]

Genomic region (view in browser)





>retro_ecab_887
ATGGCAGAGGGAGAGGTGAACCAAGATTTCATTTCCAAAATGGAAAATCCATCAGACTCA
GCTGTGACCTTACCCAGCATTCCACAGGCCTGTGCCCATCCACCACCTCCCCACACAAAC
AGTTCAAGAAAACAACCCATGTGTGCAATACTTAGAGAACAATTGAGGAAAATAAGGTCT
TCATTTAACTCCCGTGACAGCATGGTAAAATGTCTTAAAGTAGAGAGTGAAGAAAACATT
CAGACCTTTTCAGAGAAACCTGCACCTTCAACAGAAAACTGTTTGGAATTTCAAGAAAAT
TTCAAACACATAGACAGTGAATTTGAAGAAAGTACATATTGAAAAATACCTTCAAGAATA
TCAACACCTGTGAATCTAAAGCACTTGAACCTGGGTCACGCAGTGATGATCTCCAAAATG
ATTTTGTGAATAAGAATCTTGCCAAACAAGGATGAAATGAAGGAAAAGCGAAATTGGTGA
AGCAGGTTCAGGAGAAAGAAGACTTTCTTCGGAGGCTAAAAGTAGTCAAAATGTGTAGAT
CAAAGAATGACCTGTCTCAGGTACCGTTGTTAACACGGAAGTGGAGAAGCTGTTACGAGT
CGCAGTGGGCTGTGTCTGAGCAGGACAAGAAACTGAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEGEVNQDFIFKMESPSDSAVISPGTPQACARPPSPHTSSSRKQPMSATLRERLRKTRSSFNSCYSVVKRLKVENEGDDQNFSEKPPTSVEENSVEFRE
MAEGEVNQDFI.KME.PSDSAV..P..PQACA.PP.PHT.SSRKQPM.A.LRE.LRK.RSSFNS..S.VK.LKVE.E...Q.FSEKP..S..EN..EF.E
Retrocopy
MAEGEVNQDFISKMENPSDSAVTLPSIPQACAHPPPPHTNSSRKQPMCAILREQLRKIRSSFNSRDSMVKCLKVESEENIQTFSEKPAPST-ENCLEFQE


Parental protein
DVKRIDSEFEENT-SLKNTFKDISACESESLHAGSCSEDLQNDFVNEDLPREGLNEEKAKLVKQIQEKEDLLRRLKLVKMYRSKNDLSQLQLLIKRWRSC
..K.IDSEFEE.T..LKNTFK.I..CES..L..GS.S.DLQNDFVN..L...G.NE.KAKLVKQ.QEKED.LRRLK.VKM.RSKNDLSQ..LL...WRSC
Retrocopy
NFKHIDSEFEEST/ILKNTFKNINTCESKALEPGSRSDDLQNDFVNKNLAKQG*NEGKAKLVKQVQEKEDFLRRLKVVKMCRSKNDLSQVPLLTRKWRSC


Parental protein
--SQLLLCELQSALS
..SQ....E....LS
Retrocopy
YESQWAVSEQDKKLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide