RetrogeneDB ID:
retro_ecab_888
Organism:
Horse ( Equus_caballus )
Location:
6:72561654-72562426 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.36 %
Coverage:
95.59 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_888
TACAAAGCAATAGTCATAAGGATGGTCACTGATGTTGGGAAAAGAATAGATAAACACAGT
GAGAACTTCAACAAATAATTTGAAAATATAAAAAAGGACCAATCAGAACTGAAGAATACA
ATAATGAAAAATTCACTAGAGAGAATCAGCATCAAAGTAGATGACACTGAAGAAAGGAAC
AGTGAGCTGGATGAAAGAATAGAGGAAATCACCCAAGCTGAACAGAAAAAAGAGAAAAGA
ATTAAAAAGAATGAAGACTGTCTAAGGGACTCTGGGACATCAAGTGTACTAATATCCATA
TTATAAGTGTCCCAGAAGGAGATGACAGAGGCAAAGGAGCATAGAACCTATTTAAAGAAA
TAATAGCTGAAAACTTTCCTGACCTAAGGAAGGAAACAGGTACAGGAAGCACAGAGAACA
CCAAACAAGATGAACCCAAAGAGACCCATACCAAGACACATTATGATTAAAATATCAAGA
ATTAAAGATAAAGAGAGAATCCTAAAAACTCCAAGAGAAAGGCAACAAGTTACATACAAA
GAAAACCCCATAACATTATCAGCTGACTTCTTGGCAGAAACCTTACAGGTTAAAAGGGAA
TAGAACAACATATTCAAAGTACTGAAAGGAAAAAACATACAATCAAGAATGCTCTACCTG
GTAAGGTTATCATTCAGAGTAGAAGGATGATAAGGAGTTTTCCAGACAAGCAAAACTACA
AGAGTTTCTCACCACTAAAGTGCCCTTACAAGAAATATTAAAGGGATTAATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FKQKVIRMLTDLGRRMDEPSGNFNKELENIKKNQSKNKHRLKQKTTHQLGKNICKDSIAQERTNKLDKRLEEITQADQIKEKRIKKNEDGLRD-LWNNIK
.K..VIRM.TD.G.R.D..S.NFNK..ENIKK.QS..K................K.....ER...LD.R.EEITQA.Q.KEKRIKKNED.LRD.LW..IK
Retrocopy
YKAIVIRMVTDVGKRIDKHSENFNK*FENIKKDQSELKNTIMKNSLERIS---IKVDDTEERNSELDERIEEITQAEQKKEKRIKKNEDCLRD/LW-DIK


Parental protein
HTNIHIIDVPEGEERDKGAENLFGEIIAENFPNLR-RKYPGEAQRAPNKINPKRPTPRHIIIKMSKSKDKERILNALRERQQVTYKGNPIRLSANFSAET
.TNIHII.VPEG..R.KGA.NLF.EIIAENFP.LR.RK...EAQR.PNK.NPKRP.PRHI.IK.S..KDKERIL...RERQQVTYK.NPI.LSA.F.AET
Retrocopy
CTNIHIISVPEGDDRGKGA*NLFKEIIAENFPDLR\RKQVQEAQRTPNKMNPKRPIPRHIMIKISRIKDKERILKTPRERQQVTYKENPITLSADFLAET


Parental protein
LETRREWHDILKVLKGKNLQPRILYSARLSF-MEG-EIEFPDKQNLEEFITKKPALQEMLNGLI
L...RE...I.KVLKGKN.Q.R.LY..RLSF..EG...EF.....L.EF.T.K..LQE.L.GLI
Retrocopy
LQVKRE*NNIFKVLKGKNIQSRMLYLVRLSFRVEG\DKEFSRQAKLQEFLTTKVPLQEILKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide