RetrogeneDB ID:
retro_ecab_89
Organism:
Horse ( Equus_caballus )
Location:
12:1795917-1796331 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.86 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS25
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]

Genomic region (view in browser)





>retro_ecab_89
GGCTGCAGTGGTAATCGCTTCTCTCTGAGCTTTGTGATGCCGCCCAAGGACAACAAGAAG
AAGAAAGATGCCGGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCTGGGGGC
AAAGCCACAAAGAAGAAATGGTCCAAAGGCAAAGTTCAGGACAAGCTCAATAACCTGGTC
TTGTTTGACAAAGCAACGTATGACAAACCCTGTAACGAAGTGCCCAGATATAAGCTTATA
AGCCCAGCTGTTGTCTCAGAGAGAATGAAGATTCGCGGTTCCCTGGCCAGGGCAACCCTT
CAAGAGCTCCTCAGTAAAGGGCGACTTAAGCTGGTTTCAAAGCACAGAGCTCAAGTAATT
TATACCAGAAACACCAAGGGTGGAGATGCCCCAGCTGCAGGTGAAGGGGCGTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.12
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GCSGDSCCPSFAMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAAL
GCSG.....SF.MPPKD.KKKKDAGKSAKKDKDPVNKSGGKA.KKKWSKGKV.DKLNNLVLFDKATYDK.C.EVP.YKLI.PAVVSER.KIRGSLARA.L
Retrocopy
GCSGNRFSLSFVMPPKDNKKKKDAGKSAKKDKDPVNKSGGKATKKKWSKGKVQDKLNNLVLFDKATYDKPCNEVPRYKLISPAVVSERMKIRGSLARATL


Parental protein
QELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
QELLSKG..KLVSKHRAQVIYTRNTKGGDAPAAGE.A
Retrocopy
QELLSKGRLKLVSKHRAQVIYTRNTKGGDAPAAGEGA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide