RetrogeneDB ID:
retro_ecab_890
Organism:
Horse ( Equus_caballus )
Location:
6:82964842-82965215 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
55.22 %
Coverage:
63.41 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
HMGB3
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Genomic region (view in browser)
>retro_ecab_890
ACAGTCAGGATAGCTACACGTGACCTCAAGAAAGCAAAGCACGAGCTGTCTGTTCATGCC
TTCTTTGGGAAGACCTGCTGGGAGGGACACATGAGGAAAAACCCAGAGACCCCTGTGAAC
TGTGTGTTTTCCAAGTGCTCTGAGAGGGGCAATACAGGGTGTGGGAAAGAGAAGTACAAA
TTGATGAAATGGCAAAGTGCACCAGATCAGGAAATGAAGGATTGGAGACCAGCTAAGGGA
GGCAACAAGAAAGATCGTACTATCCCAAATACCCTCATACTCCACTTGGCTTCTTCCTCT
TCTGCTTAGACCTCTGCCTAAGGTCAAATCCATAAACCTAGGCATTTCCATTGGAGACCT
GGCCAAATGGCTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.4 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
