RetrogeneDB ID:
retro_ecab_892
Organism:
Horse ( Equus_caballus )
Location:
6:952602-953226 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.57 %
Coverage:
70.99 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS2
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]

Genomic region (view in browser)





>retro_ecab_892
CTCCCTGTCAAGGAGTCTGAGCCCATTGACCTTTCTCTGGAGGCAGCTCTCAAAGGCGGG
GTTTTGAAGAATAGTCCCCTGCAAAAGCTAACCTGCACTGGCCAGTGGACCAAGTTCAAG
GCATTTGTCGCCATCAGGGACTACAACAGCTATGTCGGTCTGGGTGTTAAGTGCTTCAAG
GAGGCAGCTGTCGCCAGACACAGGGCCATGGTGCTGGCCTACATTTCCATAGATACAGGG
TGGCGAGGCCACTGGGGGATCAAGATTGGCAAGCCCCACATCATCTCTCGCAAGGTAACA
GGCCTCTGCGTCTCTGTGCTGGTGTGCCTCATTAATACCCCCAGAAGCACTAGCATCATC
TGGGCCCCTGGGCTCATGAAGGTGCTGAGGTTGACCAGTATGGACAACTGCTACACTGAG
GCCAGAGGCTGTGCTGCCACCCTAGGCACTTTGTCAAGGTCACATTTGCTGGCATCTCCA
AGATCCACAGGTATCTCATCCCACCACCCCTAGAAAGAGACCGTGTGTGCAAAGTCTCCG
TGTCAGAAGTTTACTGACCTTCTAGTAAAGACCCACAGCAGAGTCTCTATGCAGAAGATC
CAGGTTCTAGCTGTAGCCACCACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVT
LP.KESE.ID..L.A.LK..VLK..P.QK.T..GQ.T.FKAFVAI.DYN..VGLGVKC.KE.A.A...A..LA..SI....RG.WG.KIGKPH....KVT
Retrocopy
LPVKESEPIDLSLEAALKGGVLKNSPLQKLTCTGQWTKFKAFVAIRDYNSYVGLGVKCFKEAAVARHRAMVLAYISIDTGWRGHWGIKIGKPHIISRKVT


Parental protein
GRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLG-NFAKATFDAISKTYSYLTPDLWK-ETVFTKSPYQEFTDHLVKNHTRVSVQ
G.C.SVLV.LI..PR.T.I..AP...K.L.....D.CYT.ARGC.ATLG..F.K.TF..ISK...YL.P.....ETV..KSP.Q.FTD.LVK.H.RVS.Q
Retrocopy
GLCVSVLVCLINTPRSTSIIWAPGLMKVLRLTSMDNCYTEARGCAATLG/HFVKVTFAGISKIHRYLIPPPLE\ETVCAKSPCQKFTDLLVKTHSRVSMQ


Parental protein
RTQAPAVATT
..Q..AVATT
Retrocopy
KIQVLAVATT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide