RetrogeneDB ID:
retro_ecab_894
Organism:
Horse ( Equus_caballus )
Location:
6:6723131-6723527 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.5 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FABP5
Parental gene aliases:
No gene alias available
Parental gene description:
fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560]

Genomic region (view in browser)





>retro_ecab_894
ATGGCCACCATTCAGCTGGGAGAAAGATGGTACCTGGTGGAGAGCATAGACTTTGAGGAA
TACGTGAAGGCAGTAGGTGTAGCAATGGCTCTGTGATAAATGGATGTAATGGCCAAACTA
GATGGTGTCACCTCTGCTGACAACAGCCTCACCATAAAAACTGAAAAGACTTTGAAACAG
CACAGTTTTCTCATAAACTGGGAGAGGAGTTTGAAGAAACTACAGCTGATGGCAGGAACA
CTCAGATCTGCAACTTTACAAACGGTGTGTTGGTTCAACACCAGGAACGGGGTGGGAAAG
GAAAATACAACAACAAGAAAAGTGGAAGATGGAAAATTAGTGGCGGGATGCCTTACGAAC
CGAGTCACCTGTCCTCAGATCTATGAAAAAGCAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATIEQLVGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITSDGKNLTIKTESTLK-TTQFSCNLGEKFEETTADGRKTQTVCNFTDGALVQHQE
MATI.QL..RW.LVES..F.EY.K.VGV.MAL..M..MAK.D.....D...LTIKTE.TLK.T.QFS..LGE.FEETTADGR.TQ..CNFT.G.LVQHQE
Retrocopy
MATI-QLGERWYLVESIDFEEYVKAVGVAMAL**MDVMAKLDGVTSADN-SLTIKTEKTLK/TAQFSHKLGEEFEETTADGRNTQ-ICNFTNGVLVQHQE


Parental protein
WDGK-ESTITRKLQDGKLVVECVMNNVTCTRVYEKVE
..GK.E.T.TRK..DGKLV..C..N.VTC...YEK.E
Retrocopy
RGGK\ENTTTRKVEDGKLVAGCLTNRVTCPQIYEKAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide