RetrogeneDB ID:
retro_ecab_895
Organism:
Horse ( Equus_caballus )
Location:
6:7853717-7854149 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.55 %
Coverage:
88.48 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_895
GGGGGAGTTGGTTCCATGTCTGCCCTGCCCCCCAAGATTGGCCCCCTGGGTCTGTCTCCA
TAAAGGCTGGTGATGACATCGCCAAGCAACTGGTGATTGGAAGGGTCTGAGGGTTACAGT
GAAACTGACCATTCAGAAGAGACAGGCCCAGAACGAGGTGGTACCTTCTGCCTCTGTTCT
GATCATCAAAGGGCTCAAGGAAGCGCCAAGAGACAGAAAGAAGCAGAAAAACACTAAGCA
CAGTGGAAACCACTTTTGATGAGACTGTCAACATTGCCTGACAGACGCAGCACCCATCTA
TACCTAGAGAACTCTCTGGAACCAGTAAAGAGATCCTAGGACTGCCCAGTCTGTGGGCTG
CCATGTTGACGGCTGCCACCCTCATGACATCATAGATGACATCGACAGTGACGCAGTGAA
TGCCCAGCTAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GEVGATSALAPKIGPLGLSP-KKVGDDIAK-ATGDWKGLRITVKLTIQNRQAQIEVVPSASALII-KALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM
G.VG..SAL.PKIGPLGLSP..K.GDDIAK.ATGDWKGLR.TVKLTIQ.RQAQ.EVVPSAS.LII.K............K........TFDE.VNIA.Q.
Retrocopy
GGVGSMSALPPKIGPLGLSP/IKAGDDIAK/ATGDWKGLRVTVKLTIQKRQAQNEVVPSASVLII\KGSRKRQETERSRKTLS-TVETTFDETVNIA*QT


Parental protein
RHRSLARELSGTIKEILG-TAQSVGCNVDGRHPHDVIDDINNGAV-ECPAS
.H.S..RELSGT.KEILG.TAQSVGC.VDG.HPHD.IDDI...AV.ECPAS
Retrocopy
QHPSIPRELSGTSKEILG/TAQSVGCHVDGCHPHDIIDDIDSDAV/ECPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide