RetrogeneDB ID:
retro_ecab_898
Organism:
Horse ( Equus_caballus )
Location:
6:30215060-30215483 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TMEM242
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 242 [Source:HGNC Symbol;Acc:17206]

Genomic region (view in browser)





>retro_ecab_898
ATGGAGGCGGCGGGTGCTGGGAGTGGGGAGCCGGCCCCGCGCCTAGAGGCTCCGGGGTCC
GCCGAGGACCGGCTTTTCCTGGTGAAAGGTGGAATTTTCCTTGGTACTGTTGCTGCAGCT
GGAATGCTGGCTGGATTTGTAACAACGTTGTCATTGGCTAAAAAGAAAAGCCCTGAATGG
TTCAATAAGGGAAGCGTGGCCACGGCCGCCTTACCGGAGAGTGGCTCTTCCCTTGCCTTG
CGAGCCCTGGGCTGGGGCTCCCTTTACGCGTGGTGTGGGGTTGGCGTGATCAGCTTCGCA
GTCTGGAAAGCCTTAGGAGTTCACAGTATGAAAGACTTTCGAAATAAAATGCAATCAATA
TTTCCAGCAATTCCCAAGAACGCCGAATCGGCTGTTGAGTGGGAGGAAGCATTGAAATCC
AAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEAAGAGSGEPAPRLEAPGSAEDRLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSVATAALPESGSSLALRALGWGSLYAWCGVGVISFA
MEAAGAGSGEPAPRLEAPGSAEDRLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSVATAALPESGSSLALRALGWGSLYAWCGVGVISFA
Retrocopy
MEAAGAGSGEPAPRLEAPGSAEDRLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSVATAALPESGSSLALRALGWGSLYAWCGVGVISFA


Parental protein
VWKALGVHSMKDFRNKMQSIFPAIPKNAESAVEWEEALKSK
VWKALGVHSMKDFRNKMQSIFPAIPKNAESAVEWEEALKSK
Retrocopy
VWKALGVHSMKDFRNKMQSIFPAIPKNAESAVEWEEALKSK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide