RetrogeneDB ID:
retro_ecab_899
Organism:
Horse ( Equus_caballus )
Location:
6:34976979-34978083 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
97.83 %
Coverage:
75.31 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
GMCL1
Parental gene aliases:
No gene alias available
Parental gene description:
germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843]
Genomic region (view in browser)
>retro_ecab_899
GCCGGCCACGGCTTGTGTTACTGCCCGGGCAGCCGCAAGAGCAAGCGGAGCAGCGGGGCC
TTCTGCTACTGTCACCCCGACTCCGAGACAGACGAGGATGAGGAGGAAGGGGACGAGCAG
CAGCGGCTCCTCAACACCCCTCGAAGGAAAAAATTAAAGAGTACCTCCAAATATATTTAT
CAAACATTATTTTTGAATGGTGAAAATAGCGACATTAAGATTTGTGCTCCAGGAGAAGAA
TGGAGTTTACACAAAATATGTTTATGTCAATCTGGCTACTTTTCTAGTATGTTCAGTGGT
TCTTGGAAAGAATCCAGCATGAATATTATTGAACTGGAGATTCCTGATCAGAATATTGAT
ATAGAAGCACTGCAGGTTGCATTTGGGTCACTGTATCAAGATGATGTCTTAATAAAGCCC
AGTCGAGTTATTGCCATTTTGGCAGCAGCTTGTATGCTGCAGTTGGTTGGTTTAATACAG
CAGTGTGGTGAGACAATGAAGGAAACAATTAATGTGAAAACTGTGTGTGGCTATTACACA
TCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAAC
AATTTGATGACTCATCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAG
CAGCTTATTGGTTCATCTAACTTATTTGTGATGCAAGTGGAGATGGATGTATATACAGCT
CTTAAAAAGTGGATGTTTCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTT
TTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAGAAAAGATTTTGAAGGTATGACCTTC
CTTGAAACTGAGCAGGGAAAACCATTTGTGTCAGTATTCAGACATTTAAGGTTACAGTAT
ATTATCAGTGATTTGGCCTCTGCGAGAATTATTGAACAAGATTCTCTAGTACCTTCAGAA
TGGTTATCTTCTGTTTATAAACAGCAGTGGCTTGCTATGCTCCGGGCAGAACAAGACAGT
GAGGTGGGGCCTCAAGAAATCAATAAAGAAGAATTAGAGGGAAATAGCATGAGGTGTGGT
AGAAAGCTTGCCAAAGATGGTGAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.52 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.65 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.1 |
| SRP021940_testis | 12.05 |
Parental protein coverage
Changes in the retrocopy sequence
