RetrogeneDB ID:
retro_ecab_9
Organism:
Horse ( Equus_caballus )
Location:
3:57158137-57159799 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.66 %
Coverage:
99.64 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GK
Parental gene aliases:
No gene alias available
Parental gene description:
glycerol kinase [Source:HGNC Symbol;Acc:4289]

Genomic region (view in browser)





>retro_ecab_9
ATGGCAGCCCCAAAGAAAGCAGTTGTGGGGCCGTTGGTGGGGGCAGTGGTCCAGGGGACT
AACTCTTCTCGCTTTCTGGTCTTCAATTCAAAAACAGCGGAACTACTTTGTCGCCATCAA
GTGGAATTAACACAAGAGTTCCCAAAGGAAGGATGGGTGGAACAAGACCCTAAGGAAATT
CTTCAGTCTGTATATGAGTGTATAGAGAAAACGTGTGAGAAACTTGGCGAGCTGAATATT
AATATATCCAACATAAAAGCTATTGGTGTCAGCAATCAGAGGGAAACCACTGTAATCTGG
GACAAGGTAACTGGAGAGCCGCTCTACAATGCTGTGGTCTGGCTTGATCTAAGAACCCAG
TCTACCGTTGAGAATCTTAGTAAAAAAATTCCTGGAAATAATAACTTTGTCAAGTCCAAG
ACGGGCCTTCCACTTAGCACTTACTTCAGTGCAGTAAAACTTCGTTGGATTCTTGACAAC
GTGAGAAAAGTTCAAAAGGCTGTTGAAGAAGGGAGAGCTCTTTTTGGTACCGTTGATTCA
TGGCTTATCTGGAGTTTGACAGGAGGAGTTAATGGAGGCGTCCATTGTACAGATGTAACA
AATGCAAGTAGAACAATGCTTTTCAACATCCATTCTTTGGAGTGGGATAAAGAGCTCTGT
GACTTTTTTGAAATTCCAAAGGATATTCTTCCGAAAGTCTGGAGTTCTTCTGAGATCTAT
GGCCTCATGAAAGCTGGGGCTTTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGACCAG
TCGGCTGCATTAGTAGGACAAATGTGCTTCCAGGAAGGACAAGCCAAAAACACGTATGGA
ACAGGTTGTTTCTTACTATGTAATACAGGTCGTAAGTGCGTATTTTCTGAACATGGCCTT
CTGACCACAGTGGCTTACAAACTAGGCAGAGATAAGCCAGTATGTTACGCATTGGAAGGT
TCTGTTGCTATAGCAGGTGCTGTTGTTCGCTGGCTAAGAGACAATCTTGGAATTATAGAG
ACCGCAGAAGAAATTGAAAAACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTACTTC
ATCCCAGCTTTTTCAGGGTTATATGCACCTTATTGGGATCCCAGTGCAAGAGGGCTAATC
TGTGGTCTCACTCAGTTTACCAACAAACGTCATATTGCTTTTGCCGCATTAGAAGCTGTT
TGTTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGTGACTGTGGAATTCCACTCAGT
CACTTGCAGGTGGATGGAGGACTGACCAACAACAAAGTTCTTATGCAACTACAAGCAGAC
ATTCTGCATATTCCAGTAATAAAGTCCTGTATGTCTGAAACAACTGCACTGGGAGCTGCC
ATGGCAGCAGGAGCTGCAGAAGGAGTGGGCGTTTGGAGTCTTGAACCCGAAGATTTGTCA
ACCATCACGATAGAACGGTTTGAACCACGGATCCAAGCCACAGAAAGTAATACTCGTTAT
TCTACATGGAAGAAAGCTGTGATGAAGTCAATGGGTTGGGCTACAACTCAGTCTCCTGAA
AATGGTGATGCTAATATTTTCTCTAGTCTGCCCTTGGGCTTTTTTGTAGTGAGTAGCATG
ATAATGTTAATTGGAGCAAGATACATCTCAGGTGTACCATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.76
SRP021940_synovial_membrane 0.0
SRP021940_testis 224.65

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAATKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNIDISNIKAIGVSNQRETTVVW
MAA.KKAV.GPLVGAV.QGT.S.RFLVFNSKTAELL..HQVE..QEFP.EGWVEQDPKEILQSVYECIEKTCEKLG.LNI.ISNIKAIGVSNQRETTV.W
Retrocopy
MAAPKKAVVGPLVGAVVQGTNSSRFLVFNSKTAELLCRHQVELTQEFPKEGWVEQDPKEILQSVYECIEKTCEKLGELNINISNIKAIGVSNQRETTVIW


Parental protein
DKLTGEPLYNAVVWLDLRTQSTVENLSKRIPGNNNFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGTIDSWLIWSLTGGANGGVHCTDVT
DK.TGEPLYNAVVWLDLRTQSTVENLSK.IPGNNNFVKSKTGLPLSTYFSAVKLRW.LDNVRKVQKAVEE.RALFGT.DSWLIWSLTGG.NGGVHCTDVT
Retrocopy
DKVTGEPLYNAVVWLDLRTQSTVENLSKKIPGNNNFVKSKTGLPLSTYFSAVKLRWILDNVRKVQKAVEEGRALFGTVDSWLIWSLTGGVNGGVHCTDVT


Parental protein
NASRTMLFNIHSLEWDKELCEFFEIPMKVLPNVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGRKCVFSEHGL
NASRTMLFNIHSLEWDKELC.FFEIP...LP.V.SSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQ.GQAKNTYGTGCFLLCNTGRKCVFSEHGL
Retrocopy
NASRTMLFNIHSLEWDKELCDFFEIPKDILPKVWSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQEGQAKNTYGTGCFLLCNTGRKCVFSEHGL


Parental protein
LTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIQTSEEIEKLAKEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAV
LTTVAYKLGRDKPV.YALEGSVAIAGAV.RWLRDNLGII.T.EEIEKLAKEVGTSYGCYF.PAFSGLYAPYW.PSARG.ICGLTQFTNK.HIAFAALEAV
Retrocopy
LTTVAYKLGRDKPVCYALEGSVAIAGAVVRWLRDNLGIIETAEEIEKLAKEVGTSYGCYFIPAFSGLYAPYWDPSARGLICGLTQFTNKRHIAFAALEAV


Parental protein
CFQTREILDAMNRDCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLEPEDLSAVTMERFEPQINAEESEIRY
CFQTREILDAMNRDCGIPLSHLQVDGG.TNNK.LMQLQADIL.IPV.K..M.ETTALGAAMAAGAAEGVGVWSLEPEDLS..T.ERFEP.I.A.ES..RY
Retrocopy
CFQTREILDAMNRDCGIPLSHLQVDGGLTNNKVLMQLQADILHIPVIKSCMSETTALGAAMAAGAAEGVGVWSLEPEDLSTITIERFEPRIQATESNTRY


Parental protein
STWKKAVMKSMGWVTTQSSESGDPSIFCSLPLGFFIVSSMVMLIGARYISG
STWKKAVMKSMGW.TTQS.E.GD..IF.SLPLGFF.VSSM.MLIGARYISG
Retrocopy
STWKKAVMKSMGWATTQSPENGDANIFSSLPLGFFVVSSMIMLIGARYISG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide