RetrogeneDB ID:
retro_ecab_90
Organism:
Horse ( Equus_caballus )
Location:
2:82265092-82265575 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.25 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_ecab_90
ATGACCAACACGAAAGGAAAGAGGAGAGGCACCCGCTATATGTTCTCTAGGCCGTTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGCGAATCTACAAGAAAGGTGATATTGTA
GACATCAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAA
ACTGGAAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTATTGTAAACAAACAAGTA
AAGGGTAAGATTCTTGCCAAAAGAATTAATGTACGTATTGAGCATATTAAGCACTCTAAG
AGCCAGGATAGCTTCCTGAAACGTGTGAAGGAAAATGATGAGAAAAAGAAGGAAGCCAAA
GAGAAGGGTCCTTGGGTTCAACTGAAGCACCAGCCTGCTCCACCCAGAGAAGCACACTTT
GTGAGAACCAATGGAAAGGAGCCTGAGCTGCTGGAAACCATTCCCTATGAATTCATGGCA
TGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.52
SRP021940_cerebellum 0.4
SRP021940_embryo 11.79
SRP021940_placental_villous 2.33
SRP021940_synovial_membrane 3.88
SRP021940_testis 1.6

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGI.VNKQVKGKILAKRINVRIEHIKHSK
Retrocopy
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSK


Parental protein
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
S.DSFLKRVKEND.KKKEAKEKG.WVQLK.QPAPPREAHFVRTNGKEPELLE.IPYEFMA
Retrocopy
SQDSFLKRVKENDEKKKEAKEKGPWVQLKHQPAPPREAHFVRTNGKEPELLETIPYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide