RetrogeneDB ID:
retro_ecab_900
Organism:
Horse ( Equus_caballus )
Location:
6:37879419-37879831 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.86 %
Coverage:
92.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
UBE2V1
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2 variant 1 [Source:HGNC Symbol;Acc:12494]

Genomic region (view in browser)





>retro_ecab_900
GTTAAATTTACCTATGATTTTTACTTTTTAGAAGAACTTGAAGAAGACCTAAAAGAGTAG
GTGATGGTAAAGTTAGTTGAGACCTTAAAGATGGTGAAGATATGACACTTACAAGATGGA
CAGACGTGATTATTGGGCCACCAAGGACAAATTACAAAAACAGAATATGTAGCCTGAAAG
TGGAATATGTGCCTAAATACCCAGAAGCTCTCTTATCCATAAAATTTGTGAACAAAATTA
ATATGAATGGAATAAATAATACCAATGGAATATTGGATGCACAGAGCACACCACTGTAAG
CAAAATAGAAAATTTGTATAGCATTAAAGTTGTAGTCTAAGAACAAAGACATCTAATCCT
GTGGAATGAAAATATGATGCTTCCACAATCACCAGAAAGACAATTATATAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKVPRNFRLLEELEEG-QKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAI-S
VK....F..LEELEE...K.VGDG.VS..L.D.EDMTLTRWT..IIGPPRT.Y.NRI.SLK.E..PKYPEA.....FV.KINMNG.N..NG..D......
Retrocopy
VKFTYDFYFLEELEED/PKRVGDGKVS*DLKDGEDMTLTRWTDVIIGPPRTNYKNRICSLKVEYVPKYPEALLSIKFVNKINMNGINNTNGILDAQST/T


Parental protein
VLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS
...K..N.YSIKVV..E.R.L....ENM.LPQ.PE.Q.Y.
Retrocopy
TVSKIENLYSIKVVV*EQRHLILWNENMMLPQSPERQLYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide