RetrogeneDB ID:
retro_ecab_901
Organism:
Horse ( Equus_caballus )
Location:
6:39159618-39160128 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.35 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
TIMM17A
Parental gene aliases:
No gene alias available
Parental gene description:
translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315]

Genomic region (view in browser)





>retro_ecab_901
GAGGAGTACACTCGGGAACCGTGCCCCGGGCGAATTGTGGATGACTGTGGTGGGGTCTTT
ACGATGGACACCATAGGTGGTTGTATCTTTCAAGCAATCAAAGGCTTTCGCAATTCTCCG
GTGGGAGTGAACCACAGACTGCGCGGGAGTTTGACAGCTATTAAAACCAGAGCTCCCCAG
CTGGGAGGTAGCTTTGCAGTTTGGGGAGGTCTGTTTTCCACGATCGACTGCAGTATGGTT
CAGGTCAGAGGGAAGGAGGACCCCTAGAACTCCATCACAGGTGGTGCCTTAACAGGAGCC
ATCCTGGCCACGAGAAATGGACCAGTGGCCATGGTCGGGTCAGCCGCGATGGGTGGCATT
CTCCTAGCTTTAATTGAAGGAGCTGGTATCTTGTTGACGAGATTTGCCTCTGCACAATTT
CCCAACGGTCCTCAGTTTGCTGAAGACCGCTCCCAGTTGCCTTCAGCCCGGTTACCGTCC
TCACCTTTTGGAGACTACCGACAATATCAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEYVREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGA
EEY.REPCP.RIVDDCGG.FTM.TIGG.IFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFS.IDCSMVQVRGKEDP.NSIT.GALTGA
Retrocopy
EEYTREPCPGRIVDDCGGVFTMDTIGGCIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQVRGKEDP*NSITGGALTGA


Parental protein
ILAARNGPVAMVGSAAVGGILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPAAQLPSSPFGDYRQYQ
ILA.RNGPVAMVGSAA.GGILLALIEGAGILLTRFASAQFPNGPQFAED.SQLP.A.LPSSPFGDYRQYQ
Retrocopy
ILATRNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQFAEDRSQLPSARLPSSPFGDYRQYQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide