RetrogeneDB ID:
retro_ecab_905
Organism:
Horse ( Equus_caballus )
Location:
6:48991030-48991492 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.88 %
Coverage:
80.51 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_905
CAGATCTGAAAGCTGATTGAAATGGGTTGGTCATCCAGAAGCCTGTGACCGTCCACTCCC
AGGCTCAGTGCCGGAAAAACACCTTGGCCACGGGAAGGGCAGGCATATGGGCACAGGTAA
GCAAAAGAGGACTGCCAATGCTCAAATGCCTGAGAAGTGGGTGAGGATGATTAGAATTCT
GCACTGGCTGCATGGGAGATACCGTGAATCCAAGAAGAATGACTACTGTGTGTATCACAG
CCTGTACCTGAAAGGAAAGGAAACACATTCAAAAATAAGCGGTTTCTCATGGAGCACATT
CCTAAACTGAAGGCTGGCAAGGCTAGCGGGAATCTCCTGGATGACCGGGACAAAGCCTGC
ATATCTAAGACCAAGAAAACACGCACGTGCTGCAAAGAGCAGCTCCAGGCCAAGAAGGAG
GAAATCATCAACACTCTGTCTGAGGAGGAAGAGCCCAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIRKLIK-DGLIIRKPVTVHSRARCRKNTLA-RRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVK-GNVFKNKR
QI.KLI...GL.I.KPVTVHS.A.CRKNTLA...KGRHMG.GK.K.TANA.MPEK..W.R..RIL..L..RYRESKK.D...YHSLYLK.K.GN.FKNKR
Retrocopy
QI*KLIE/NGLVIQKPVTVHSQAQCRKNTLA/HGKGRHMGTGKQKRTANAQMPEK--WVRMIRILHWLHGRYRESKKNDYCVYHSLYLKGK/GNTFKNKR


Parental protein
ILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
.LMEHI.KLKA.KA...LL.D...A..SKTK..R....E.LQAKKEEII.TLS.EEE.KK
Retrocopy
FLMEHIPKLKAGKASGNLLDDRDKACISKTKKTRTCCKEQLQAKKEEIINTLSEEEEPKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide