RetrogeneDB ID:
retro_ecab_906
Organism:
Horse ( Equus_caballus )
Location:
6:57432126-57432521 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.82 %
Coverage:
75.14 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_906
ATAGAGAGCATCAATAACAGAATGGATCAAGGAGAAGAAAGAATCTGTGAGAAAGAAAAC
AGGAATTGGAAATTATCCAGTCAGAGGAGAAGAAAGATAAAAGAATGAAAAACAGTGAAG
AAAGCCTATGTGACCTACTAGATACCATCAAAAACAAATATGCAAATTATTAAAGTTCCA
GAAGAAGAGAGGGAGATGGGGACAGAAAGCTTATTTAAAGAAATAATGGCTGAGAACATC
CCAAATATGGGGAGAGATTTGAATATCCACGTTCATGAAGCTCATAGGTCATAAAATAAA
CTCAACTTAAAGAGATCTTCTCCAAGATATGTCATAATAAACTGTCAAAAATCATAGATG
AAGGGAGAATATTAAAATTAGCAAAAGAAAAGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VESINNRMDQAEET-CELEDRTF-EIIQSEENKEKRM-KKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANR
.ESINNRMDQ.EE..CE.E.R...EIIQSEE.K.KRM.K..K......Y....K.N..II..PE.EE....TESLFKEI.AEN.PN.G..L...VHEA.R
Retrocopy
IESINNRMDQGEERICEKENRNW/EIIQSEEKKDKRM\KTVKKAYVT-Y*IPSKTNMQIIKVPE-EEREMGTESLFKEIMAENIPNMGRDLNIHVHEAHR


Parental protein
TPNYIKAKRPSPRHIVL-KLVKVNDKEKILRAERQKK
..N....KR.SPR.....KL.K..D...IL.....KK
Retrocopy
S*NKLNLKRSSPRYVII/KLSKIIDEGRILKLAKEKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide