RetrogeneDB ID:
retro_ecab_907
Organism:
Horse ( Equus_caballus )
Location:
6:57672163-57672699 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.89 %
Coverage:
53.75 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_907
ACTGGCAAAGTCGATATTGTCACCATCAACGACTCCTTCATTAGCCTCAACTACATAGTC
TGCATGTTCCAGGATGATTCCACTCATGGCAAGTTCAATGGCACAGTCAAAGTTGAGAAC
TGGAAGCCTGTCATCAATGGAAAGCTTGTCTCCATCTTCAAGGAGTGAGATCCTGCCAAT
ATCAAATGGGGTGATGCTGCTGCTGAATATGTTGTTGAATCCACTGGTGTCTTCACTGGC
TTGGAGAAGACTGGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCTGCCTCT
TCTGCTGATGCCCCATGTTTGTGATGGGCATGAACTATGAGAAGTATGACGACTCCCTCA
AGGTTGTCAGCAGTGCCTCCTCCACTACCAACTGCTTGGCCCCCTTGGCCAAGGTCATCC
ATGACAACTTTGGCATGATAGAGGGATTCGTGACCATAGTCCATGCCATCACTGCCACCC
AGAAGACCATGGATGGTCCCTCTGGGAAGCTGTGGTGTGATGGCCATGGGGCTGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTLEKAGAHLKGGAKRVIISAP
.GKVDIV.IND.FI.LNY.V.MFQ.DSTHGKF.GTVK.E..K.VINGK...IF.E.DPANIKWGDA.AEYVVESTGVFT.LEK.GAHLKGGAKRVIISA.
Retrocopy
TGKVDIVTINDSFISLNYIVCMFQDDSTHGKFNGTVKVENWKPVINGKLVSIFKE*DPANIKWGDAAAEYVVESTGVFTGLEKTGAHLKGGAKRVIISAS


Parental protein
SADA-PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAA
SADA.PMFVMG.N.EKYD.SLK.VS.AS.TTNCLAPLAKVIHD.FG..EG..T.VHAITATQKT.DGPSGK.W.DG.GAA
Retrocopy
SADA/PMFVMGMNYEKYDDSLKVVSSASSTTNCLAPLAKVIHDNFGMIEGFVTIVHAITATQKTMDGPSGKLWCDGHGAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide