RetrogeneDB ID:
retro_ecab_908
Organism:
Horse ( Equus_caballus )
Location:
6:57773299-57773865 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.28 %
Coverage:
95.48 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_908
TTGGAGGAGAGAAATATAGAAATGCTTCAGATGGAGGAGGAGAGAGTACTAAGACTAAAA
AGAAATGAAGGAATTCTCTGAGAAATATCTGACTCTATTAAGAAAGGCAACATAAGGATT
ATAGGTATTCCAGAGGAAGAAGGGAGGGAGAAAGGAGAAGACAGCTTGTGCAAAGAAATA
ATAGCTGAGAACTTCCCAAACCTGAGAAAGAAGTTGGAATTACAGGTAAAATAAGCTAAT
AGAACTCCTAACTACATTAATGTAAAAAGACCTCTCCAAGCATAAGGTAGTAAAACTGGC
AAAAGTCAATGACAAAGAAAAAACATTAAGGGCAGCAAGGCAGAAGAAAATATCTTACAA
AGGAACTCCTATCAGGATTTCAGCAGATTTCTCAGCAGACCTCACATACTAGGAGAGAGT
TGAATGATATATTCAAATCTTTGGAACACAAAAACTTTCAGCCAAGAATACTCTATCCAG
CGAAAATATCCTTCAGATATGATGGAGAAATAATATCTTTCCCAGATAAACAAAAGCTGA
GGGAGGTCGTTATCACAAGATCTCCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERP-SP-RHILV
LE.RN.EML.MEEER.LRLKR.E.I..EI...I.K.NIRII.IP..E.R.....SL.KEII.ENF.NL.K.LE.QVK.ANRTPNYINV.RP.SP..H..V
Retrocopy
LEERNIEMLQMEEERVLRLKRNEGIL*EISDSIKKGNIRIIGIPEEEGREKGEDSLCKEIIAENFPNLRKKLELQVK*ANRTPNYINVKRP/SP/KHKVV


Parental protein
KLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPP
KLAK...KE.....AARQKKI.YKG.PIR.SADFS.QT..TRRE.NDI.K.L..KN..PRILYP.K.SFRY..EI..F.DKQKLRE...TR.P
Retrocopy
KLAKVNDKEKTL-RAARQKKISYKGTPIRISADFS\QTSHTRRELNDIFKSLEHKNFQPRILYPAKISFRYDGEIISFPDKQKLREVVITRSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide