RetrogeneDB ID:
retro_ecab_910
Organism:
Horse ( Equus_caballus )
Location:
6:61538559-61539005 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.33 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
NDUFA12
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Source:HGNC Symbol;Acc:23987]

Genomic region (view in browser)





>retro_ecab_910
CTGAAGGACATGACTGAGTTCCCATGGGTCCTGAAGAATGGTCTGCAGCAGGTCAGTAGC
CACGGTGGCCTCTGAGCCTATCTACAAATTTTCTTCGGTGCAAATGATATGAGGATTGGT
ACATTAGAGGAGGGAGGCAAATATGGAGACAAATACTATGAAGACAACAAGTAGTTTTTT
GGCTGTCACCGATGGGTTATATATACTCCTGACAGGAATGACAGAAACACATTCTGGGAT
GTAGATGGAAGCATGGTGCCCCATGAATGGCATCTTTGGCTTCATTGTATGACCAATGAT
TCTCCAACAGCAAAACCACCTATTGCTCATAAATTCATTTGGACAAACCATAAATTCAAT
GGAGTGGCACTCCAGAACAATATGCAGCTTATTCTACCACTAGAAAGAAGATTCGGGAGT
GGGTCCCACCTTCAATACCTTACAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRSKMEFLQVLRRGLQRISGHGGR-GYLRVFFRANDARVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTYWDVDGSMVPPEWHRWLHSMTDD
L....EF..VL..GLQ..S.HGG...YL..FF.AND.R.GTL....KYG.KYYEDNK.FFG.HRWVIYT...N..NT.WDVDGSMVP.EWH.WLH.MT.D
Retrocopy
LKDMTEFPWVLKNGLQQVSSHGGL*AYLQIFFGANDMRIGTLEEGGKYGDKYYEDNK*FFGCHRWVIYTPDRNDRNTFWDVDGSMVPHEWHLWLHCMTND


Parental protein
PPTTKPPTARKFIWTNHKFN-VSGTPEQYVPYSTTRKKIQEWVPPSTPYK
.PT.KPP.A.KFIWTNHKFN..SGTPEQY..YSTTRKKI.EWVPPS.PYK
Retrocopy
SPTAKPPIAHKFIWTNHKFN/WSGTPEQYAAYSTTRKKIREWVPPSIPYK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide