RetrogeneDB ID:
retro_ecab_911
Organism:
Horse ( Equus_caballus )
Location:
6:61772425-61773132 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.05 %
Coverage:
76.55 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
PPP4C
Parental gene aliases:
No gene alias available
Parental gene description:
protein phosphatase 4, catalytic subunit [Source:HGNC Symbol;Acc:9319]

Genomic region (view in browser)





>retro_ecab_911
ATGGCAAAGATCAACTACATGGACAAGCAGATGGAGCAGCTGCTGTGTTGTGAGATCATC
AAGGAGAGGGAAGTCAAGCCCTGTGCGTTAAGGCCAGAGAGATCTTGGTAGAAGACAGCA
GCATGCAGAGGCGTGGACTCTCCAGCCACAGTATGTGGCAACATCCATGGACAAGTCTAT
GACCTCTAGGAGCTGTTAGAGTAGGTGGCAACTTCCCTGAGACCAACTACCTCTTCACAG
GAGACATTGTGGATCGTGGTTACTATGGCATCATTGAACGTTCCTCTTTCTGTTGGACGT
TGAGGTTTGTTATCCTTACCGCATCACCCTGATCCCAGGCAACCATGAGAGCCACCAGAC
CACCCAGGTCTACAGCTCTTATGATGACTGCCCGCGTAAATATGGCTTGGTGACTATGTA
GCAGTACTGCCCTGAGATCTTTGACTACCACAGCTTTGTTGGCCGTCATCTATGATAAGA
TCTTCTGCATGCACAGAGGCCTCTCCCCATCCATGTAGACCCTGGACCAGACCCAGAGGG
TTGACCGAAAGTCAGGGGTGCCTCATGACTGGCCCATGAGTGACCTGCTCAAGTCTGACC
ATGAAGATACAACAGGCTGGGATGCGAGCCCCCGTAGGGCTGGCTACCTGTTTGGCAGTG
AGTTGGTGGCCCAGTTCCATGCAGCCAATGGCATTGACATGACCTGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEISDLDRQIEQLRRCELIKESEVK-ALCAKAREILVEESNVQR-VDSPVTVCGDIHGQFYDLKELF-RVGGDVPETNYLFMGDFVDRGFYS-VE-TFL
MA.I...D.Q.EQL..CE.IKE.EVK.ALC.KAREILVE.S..QR.VDSP.TVCG.IHGQ.YDL.EL..RVGG..PETNYLF.GD.VDRG.Y...E.TFL
Retrocopy
MAKINYMDKQMEQLLCCEIIKEREVK/ALCVKAREILVEDSSMQR\VDSPATVCGNIHGQVYDL*ELL/RVGGNFPETNYLFTGDIVDRGYYGIIE/TFL


Parental protein
LLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLS-LSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCD
.LL...V.YP.RITLI.GNHES.Q.TQVY..YD.C.RKYG.VT...YC.EIFDY.S.L.A.I..KIFC.H.GLSPS..TLDQ....DRK..VPHD.PM.D
Retrocopy
FLLDVEVCYPYRITLIPGNHESHQTTQVYSSYDDCPRKYGLVTM*QYCPEIFDYHS\LLAVIYDKIFCMHRGLSPSM*TLDQTQRVDRKSGVPHDWPMSD


Parental protein
LLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMIC
LL.SD.EDTTGW..SPR.AGYLFGS..VAQF.AAN.IDM.C
Retrocopy
LLKSDHEDTTGWDASPRRAGYLFGSELVAQFHAANGIDMTC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide