RetrogeneDB ID:
retro_ecab_913
Organism:
Horse ( Equus_caballus )
Location:
6:73359959-73360521 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.49 %
Coverage:
93.63 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
ZFAND3
Parental gene aliases:
No gene alias available
Parental gene description:
zinc finger, AN1-type domain 3 [Source:HGNC Symbol;Acc:18019]

Genomic region (view in browser)





>retro_ecab_913
GATTTTCAAAAGAAACAACCAGACGATCATTCTGCCCCAAGCACAAGAGCCAAGCAAATT
TGTTTTCCGAGGAGACCACCAGTGACAACAATACTTCGATAACCACGCCAACTTAGTCCC
AGCCAGCAGCCTCTTCCGACAGAACTCAATGTGACTTCACCCAAGTAAAGAGACGTATGG
GCCATGCACAGACACAGCTCATGTCTCGTTAATCACGCCAACCAAAAGATGCTGTGGTAC
AGATTTACAGCCTGAGAATGACGCTTCGCCAGTGAAAGGGCCACCACTACTGCAGAATAC
TGAACCATCCCAGGAAACCAGCCGATCTAAACAGAAGAGTCTACGTTGGTGCTCCCAGTG
CCAAACCAAACTGGAGCTGGTGCAGCAGGAATTGGGATGGTGCCGCTGTGGTTACGTGTT
GTGTATATTACATCGCCTCCCCAAGCAGCATGACTGCACATTTGACCACAGGGGCCACGG
CCCAGAGGAAGCCATCATGAAAATGGTGAAACTGGACCAGAAAGTGGGGCGCTCCTGCCA
GCGCATCGGGGAGGGGTGCTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DFQKKQPDDDSAPSTSN-SQSDLFSEETTSDNNNTSITTPT-LSPS-QQPLPTELNVTS-PSKEECGPCTDTAHVSLITPTKRSCGTADSQSENEASPVK
DFQKKQP.DD........SQ..LFSEETTSDNN.TSITTPT.L.P..QQPLPTELNVTS.PSKE..GPCTDTAHVSLITPTKR.CGT.D.Q.EN.ASPVK
Retrocopy
DFQKKQP-DDHSAPSTR/SQANLFSEETTSDNN-TSITTPT/LVPA/QQPLPTELNVTS\PSKETYGPCTDTAHVSLITPTKRCCGT-DLQPENDASPVK


Parental protein
RPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS
.P.LL.NTE.S.ETSRSKQKS.R.C.QCQTKLELVQQELG.CRCGYV.C.LHRLP.QHDCTFDH.G.G.EEAIMKMVKLD.KVGRSCQRIGEGCS
Retrocopy
GPPLLQNTEPSQETSRSKQKSLRWCSQCQTKLELVQQELGWCRCGYVLCILHRLPKQHDCTFDHRGHGPEEAIMKMVKLDQKVGRSCQRIGEGCS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide