RetrogeneDB ID:
retro_ecab_915
Organism:
Horse ( Equus_caballus )
Location:
6:77912658-77913198 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.89 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
DCTD
Parental gene aliases:
No gene alias available
Parental gene description:
dCMP deaminase [Source:HGNC Symbol;Acc:2710]

Genomic region (view in browser)





>retro_ecab_915
CCCAACATGAGTGAAGTGTCCTGGAGAAAACGTGATGACTATTTGCAGTGGCCTGAGTAT
TTCATGGCGGTGGCCTTCCTATCGGCACAGAGAAGCAAAGATCCAAATTCGCAGGTTGCA
GCCTGCATCGTGAATGCAGAAAACAAGATTGTCGGGATTGGGTACAATGGAATGCCAAAT
GGGTGCAGCGATGACCTGTTGCCTTGGAGGAGGACAGCGGAGAATAAGCTGGATACCAAA
TACCCTTACGTGTGCCATGCCGAGCTCAATGCCATTATGAACAAAAACTCGGCCGACGTG
AAGGGCTGTACCATGTACGTCGCCTTGTTCCCGTGCAATGAGTGTGCTAAGCTCATCATC
CAGACAGGTATCAAAGAAGTTATTTTCATGTCTGATAAATACCATGATAGCGATGAGGCA
ACCGCTGCCAGGCTCTTGTTTGATATGGCTGGGGTTACCTTCAGGAAATTCACACCAAAG
TGCAGCAAGATTGTCATTGACTTTGATTCAATTAACAGCAGACCGACTCAGAAGCCTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 1.37
SRP021940_placental_villous 0.45
SRP021940_synovial_membrane 2.14
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PNMSEVSWRKRDDYLQWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNKNSADV
PNMSEVSWRKRDDYLQWPEYFMAVAFLSAQRSKDPNSQV.ACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNKNSADV
Retrocopy
PNMSEVSWRKRDDYLQWPEYFMAVAFLSAQRSKDPNSQVAACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNKNSADV


Parental protein
KGCTMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFDMAGVTFRKFTPKCSKIVIDFDSINSRPTQKPQ
KGCTMYVALFPCNECAKLIIQ.GIKEVIFMSDKYHDSDEATAARLLFDMAGVTFRKFTPKCSKIVIDFDSINSRPTQKPQ
Retrocopy
KGCTMYVALFPCNECAKLIIQTGIKEVIFMSDKYHDSDEATAARLLFDMAGVTFRKFTPKCSKIVIDFDSINSRPTQKPQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide