RetrogeneDB ID:
retro_ecab_917
Organism:
Horse ( Equus_caballus )
Location:
7:14487345-14487665 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.89 %
Coverage:
85.48 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
NDUFS6
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7713]

Genomic region (view in browser)





>retro_ecab_917
CTGGAACTACCCAAGGAGGCCAAGTGTTTTGGGGTGTGGACTTTGCAGACTGGGGAGAGA
TCACTGCACACTGACCAGGCTTATGATGATAAAGACTACAGGAAAACTCGATTTGAAGGT
TATCAGAAAAAGGTAGATGAAAACTTCGGAATTGATTTGATAGCAGAGCAACACATAAGT
GAAGTCAAGAGTGGATAGTTGAGTGATAGTGTGTGATGAGGGGCAGCTCTTGACCACTTG
AAAGTGTAATAAATTTGGACAAAGAAACAAAAACTGGGACATGTGGTTATTGTGGTCTCT
AGTTCAGACAACACCATCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSLPGGARCFGVRTSPTGEKVTHTGQAYGAEDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVESRVISCDGGGGA-LGHPRV-YINLDKETKTGTCGYCG
L.LP..A.CFGV.T..TGE...HT.QAY...DYR..RF.G.QK.V.ENF.IDLIAEQ..SEV.S...S.....GA.L.H..V..INLDKETKTGTCGYCG
Retrocopy
LELPKEAKCFGVWTLQTGERSLHTDQAYDDKDYRKTRFEGYQKKVDENFGIDLIAEQHISEVKSG*LSDSV**GAALDHLKV/VINLDKETKTGTCGYCG


Parental protein
LQFRQHHH
L.FRQHHH
Retrocopy
L*FRQHHH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide