RetrogeneDB ID:
retro_ecab_918
Organism:
Horse ( Equus_caballus )
Location:
7:15001342-15001935 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.87 %
Coverage:
88.39 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_918
TTAGAAATGAAGAATACAATATTGGAAATTAAAAATACACTAGAGGGACTCAGTAGCAGA
GTAGCTGATACATAAGAACAGATCAGTAAGCTGGATGAAAGACTAGAGGCAATCACCCAA
GCTGAACAGATAAAAGAAAAAAGAATTAAAAAGAATAGGAACAGTCTAAGGGACCTCTGG
GACAACACCAAACACATTAACATCCATATTATAGGTGTCCTGAAGGAGAAAAGAGAGACA
TTTGAAGAAATAATAACTGAAAACTTTCTTAACTTAAGGAAGGAAACAAACACCCAGGTA
CAGGAAGCACAGAGAACACCAAACAAGATAAACATAAGAAGCCCATGGCACACACCAAGA
CATGTTTTAATTAAAACATCAAGAATTAAAGATAAAGAGACAATCCTAAAAGCCACAAGA
GAAAGGCAACAAGTTACATACAAAGGAACCCCATAAGGCTATTAGCTGAATTCTCAGCAG
AAATCTTACAGGCTAGAAGGGAGTGAAATGGTATATTTAAAGTACTGAAAGAAAAAAATC
TGCAGCCAAGAATACTCTACCAAGCAAGGTTAACATTGAGAATGGAGGGAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEVKSAITEKKSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEKRIRQNENSLRELWDNIKCANIHVIGVPEERQRGRKLFEEIIAEIFPNLRKETD
LE.K..I.E.K..L.G..SR.....E.I..LD..LE.IT.AEQ..EKRI..N.NSLR.LWDN.K..NIH.IGV..E....R..FEEII.E.F.NLRKET.
Retrocopy
LEMKNTILEIKNTLEGLSSRVADT*EQISKLDERLEAITQAEQIKEKRIKKNRNSLRDLWDNTKHINIHIIGVLKEK---RETFEEIITENFLNLRKETN


Parental protein
TQVQEAQRVPNKTSPKRP--TSRHIIIKMSKIKDKERILKAARERQQVTYKG-KPIRLSVDFSAKTLQVRREWHDIFKV-KEKNLQPRILYPARLSFTME
TQVQEAQR.PNK.....P..T.RH..IK.S.IKDKE.ILKA.RERQQVTYKG..PIRL...FSA..LQ.RRE...IFKV.KEKNLQPRILY.ARL...ME
Retrocopy
TQVQEAQRTPNKINIRSPWHTPRHVLIKTSRIKDKETILKATRERQQVTYKG/NPIRLLAEFSAEILQARRE*NGIFKVLKEKNLQPRILYQARLTLRME


Parental protein
GE
GE
Retrocopy
GE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide