RetrogeneDB ID:
retro_ecab_919
Organism:
Horse ( Equus_caballus )
Location:
7:18522089-18523450 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
96.49 %
Coverage:
90.26 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6V4L4]
Genomic region (view in browser)
>retro_ecab_919
GGCATCCTGCGGATCATCAAGCCTTGCAACCATGTGCTGAGCCTGTCCTTCCCCATCCGG
CGCGATGATGGCTCCTAGGAAGTCATCGAGGGCTACCGGGCCCAGCATAGCCAGCACCGC
ACGCCCTGCAAGGGAGGTATCCGTTACAGCACTGATGTGAGTGTAGACGAAGTGAAGGCT
TTGGCTTCTCTGATGACTTATAAGTGTGCAGTGGTTGATGTGCCATTTGGGGGTGCCAAA
GCTGGTGTTAAGATCAATCCCAAAAACTATACCGATAATGAATTGGAAAAGATCACGAGG
AGGTTTACCATGGAGCTGGCAAAGAAGGGCTTTATTGGTCCTGGCATTGATGTGCCTGCC
CAGACATGAGCACGGGCGAGCGGGAGATGTCCTGGATTGCTGACACCTATGCTAGCACCA
TAGGGCACTATGATATTAATGCCCACGCCTGTGTCACTGGGAAGCCCATCAGTCAGGGTG
GAATCTATGGGCGGATCTCTGCCACTGGCCGGGGTCTTTTCCATGGGATCGAGAACTTCA
TCAATGAAGCTTCTTACATGAGCATTCTAGGAATGACGCCAGGGTTTGGAGATAAGACGT
TTGTCGTTCAGGGGTTTGGTAACGTGGGCCTGCACTCTATGAGATACTTACATCGTTTCG
GTGCTAAATGTATTGCTGTTGGTGAATCCGATGGGAGCATATGGAATCCAGATGGTATTG
ACCCAAAAGAACTGGAAGACTTCAAATTGCAACATGGATCCATCCTGGGCTTCCCCAAGG
CAAAGCCCTATGAAGGGAGCATCTTGGAGGCCGACTGTGACATCCTGATTCCTGCTGCCA
GGGAGAAGCAGCTGACCAAGTCCAATGCACCGAGAGTCAAAGCCAAGATCATTGCTGAAG
GTGCCAATGGACCGACAACTCCGGAAGCCGATAAGATTTCCCTGGAGAGAAACATTATGG
TTATTCCCGATCTCTACCTGAACACCGGAGGGGTGGTGTCCTACTTTGAGTGGCTGAAGA
ATCTCAATCACGTCAGCTACGGCCGCCTGACCATCAAATACGAAAGGGATTCCAACTACC
ACTTGCTGATGTCTGTTCAAGAGAGTTTGGAAGGAAAATTTGGAAAGCACGGTGGGACGA
TCCCCATTGTGCCCACGGCAGAGTTCCAAGACAGGATATCGGGTGCATCTGAGAAGGACA
TCGTGCACTCCTGCTTAGCTTACACCATGGAGCGCTCTGCCCAGCAAATCATGTGTCCGG
CCATGAAGTACAACCTGAGGTTGGACCTGAGGACGGCTGCCTACGTCAACGCCATCGAGA
AAGTCTTCAAGGTGTACAATGAAGCTGGTGTGACCTTCACA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 3.08 |
| SRP021940_cerebellum | 7.32 |
| SRP021940_embryo | 3.62 |
| SRP021940_placental_villous | 3.71 |
| SRP021940_synovial_membrane | 3.8 |
| SRP021940_testis | 0.47 |
Parental protein coverage
Changes in the retrocopy sequence
