RetrogeneDB ID:
retro_ecab_92
Organism:
Horse ( Equus_caballus )
Location:
10:16360086-16360494 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
100.0 %
Coverage:
99.26 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_92
ATGGGCCGCGTCCGCACCAAGACCGTGAAGAAGGCGGCCCGGGTCATCATCGAGAAGTAC
TACACGCGCCTGGGCAACGACTTCCACACCAACAAGCGCGTGTGCGAGGAGATCGCCATC
ATCCCCAGCAAGAAGCTCCGCAACAAGATCGCGGGCTATGTCACCCACCTGATGAAGCGC
ATCCAGCGCGGCCCCGTGAGAGGCATCTCCATCAAGCTGCAGGAGGAGGAGCGCGAGCGG
AGGGACAACTACGTGCCTGAGGTGTCAGCGCTGGATCAGGAGATCATTGAAGTGGATCCT
GACACTAAGGAGATGCTGAAACTCTTGGACTTCGGCAGTCTCTCCAACCTGCAGGTCACT
CAGCCCACAGTTGGGATGAATTTCAAAACACCACGTGGAGCCGTTTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 63.71
SRP021940_cerebellum 13.64
SRP021940_embryo 38.21
SRP021940_placental_villous 18.74
SRP021940_synovial_membrane 27.76
SRP021940_testis 21.54

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPD
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPD
Retrocopy
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPD


Parental protein
TKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
TKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
Retrocopy
TKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide