RetrogeneDB ID:
retro_ecab_920
Organism:
Horse ( Equus_caballus )
Location:
7:18826166-18826459 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.0 %
Coverage:
59.64 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
IMMP1L
Parental gene aliases:
No gene alias available
Parental gene description:
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317]

Genomic region (view in browser)





>retro_ecab_920
CTGGGAAAAACCTTTCACCTGTTGGCTGTCCTGTTCAGTGTTGCTGTATAGCTCCTTGTG
CTTTTGAATATGTTGGTGGTGTTGTCGTGTATTCTGGACATTCAATGGGCTCTACAATTC
AAAATTCAGATATTATCTTTGCAGAAAATCTTACTCAACATTTTTATGGTATCCAAAGAG
GTGACACTGTGATAACAAAAAGCCCAAGTGATCCAGAATCAAATATTTGTAAAAGAGTAG
TTTATATGGAGACAAAAATCCTCACCAATTGTCCACCAGATTTCTTTAAAAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LGKTFRL-VGYTIQYACIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVCAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTSRPSDFFKS
LGKTF.L.VG...Q..CIA.CAFEYVGGVV..SG.SM..TIQNSDI..AENL..HFYGIQRGD.VI.KSPSDP.SNICKRV...E..KILT..P.DFFKS
Retrocopy
LGKTFHL/VGCPVQCCCIAPCAFEYVGGVVVYSGHSMGSTIQNSDIIFAENLTQHFYGIQRGDTVITKSPSDPESNICKRVVYME-TKILTNCPPDFFKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide