RetrogeneDB ID:
retro_ecab_921
Organism:
Horse ( Equus_caballus )
Location:
7:22900640-22901173 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.89 %
Coverage:
100.0 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
BNIP3
Parental gene aliases:
No gene alias available
Parental gene description:
BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084]

Genomic region (view in browser)





>retro_ecab_921
GGCTCCTGGGTAGAATTGCACTTCAGCAATAAATGGGAACGGGAGCAGAGTTCCAGCCTC
CGTTTCTATTTATAATGGTGAAACGGAAAAATACTGCTGAATGCCCAGCATGAGTCTGGA
CGGAGTAGTTTCAAGAGTTCTCACTGTGACCGCCCGCCTCGCTCACAGACCCCACAAGAT
ACTAACAGAGCTTCTGAAACATACCCATAGCATTGGAGAGAAAAACAGCTCTCAGTCTGA
GGAAGATTATATTGAGAGAAGGAATGAAGTTGCAAGCGTCCTGAAGAAAAACTCAGACTG
GATATGGGATTGGTCAAGTTGGCCGGAAAATATCCCCGCCAAGGAGTTCCTCTTCAGACG
CCCTAAGCGCACAGCCACACTCAGCATGAGAAACACGAAAACATGAAGAAAGGGGGCATT
GTCTCGGCAGAGTTTCTGAAAGTTTTTCTTCCGTCTCTGCTGTTGTTCATCTGCTGGCCA
TTGGGTTGGGGATCTACACTGGAAGGCCTCTGACGACCCCCACCAGCACCTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 1.57
SRP021940_cerebellum 1.64
SRP021940_embryo 0.86
SRP021940_placental_villous 0.94
SRP021940_synovial_membrane 0.73
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GSWVELHFSN-NGNGSSVPASVSIYNGEME-KILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRAFETDTHSIGEK-NSSQSEEDYIERRKEVESILKK
GSWVELHFSN.NGNGS.VPASVSIYNGE.E.KILL.AQHESGRSS.KSSHCD.PPRSQTPQDTNRA.ET......EK..S...E..YIERR.EV.S.LKK
Retrocopy
GSWVELHFSN\NGNGSRVPASVSIYNGETE/KILLNAQHESGRSSFKSSHCDRPPRSQTPQDTNRASETYP*HWREK\SSQSEED-YIERRNEVASVLKK


Parental protein
NSDWIWDWSSRPENVPPKEFLFRHPKRTATLSMRNTSV-MKKGGIFSAEFLKVFLPSLLL-SHLLAIGLGIYIGRRLTTSTSTF
NSDWIWDWSS.PEN.P.KEFLFR.PKRTATLSMRNT...MKKGGI.SAEFLKVFLPSLLL..HLLAIGLGIY.GR.LTT.TSTF
Retrocopy
NSDWIWDWSSWPENIPAKEFLFRRPKRTATLSMRNTKT/MKKGGIVSAEFLKVFLPSLLL/VHLLAIGLGIYTGRPLTTPTSTF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide