RetrogeneDB ID:
retro_ecab_923
Organism:
Horse ( Equus_caballus )
Location:
7:24438764-24439280 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.6 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
MYL9
Parental gene aliases:
No gene alias available
Parental gene description:
myosin, light chain 9, regulatory [Source:HGNC Symbol;Acc:15754]

Genomic region (view in browser)





>retro_ecab_923
ATGTCCAGCAAACCGGCCAAGGCCAAGACCACTAAGAAGCGGCCACAGCGGGCCACATCC
AATGTCTTCGCGATGTTTGACCAGTCCCAGATCCAGGAGTTTAAGGAGGCCTTCAACATG
ATGGACCAGAACTGAGATGGCTTCATTGGCAAGGAGGACTTGCATGACACGCTGGCCTCG
ATGGGGAAGGACCCCACGGACGAGTACCTGGAGGGCATGATGAGCGAGGTCCCGGGGCCC
ATCAACTTCACCATGTTCCTCACCATGTTTGAGGAGAAGCTGAACGGCACAGACCCCGAG
GACGTGACCCGCAACGCCTTCACCTGCTTCGACGAGGAGGCCTCAGGCTTCATCCATGAG
GACCACCTTCAGGAGTTGCTCACCACCATGGGCGACCGCTTCACAGACGAGGAGGTGGAC
GAGATGTACCGCGAGGCACCCATTGATAAGAAAGGCAACTTTAACTATGTGGAGTTCACC
CGTATCCTCAAACATGGTGCCAAGGACAAAGACGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPE
MSSK.AKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNM.DQN.DGFI.KEDLHD.LASMGK.PTDEYLEGMMSE.PGPINFTMFLTMF.EKLNGTDPE
Retrocopy
MSSKPAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMMDQN*DGFIGKEDLHDTLASMGKDPTDEYLEGMMSEVPGPINFTMFLTMFEEKLNGTDPE


Parental protein
DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
DV.RNAF.CFDEEASGFIHEDHL.ELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
Retrocopy
DVTRNAFTCFDEEASGFIHEDHLQELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide