RetrogeneDB ID:
retro_ecab_924
Organism:
Horse ( Equus_caballus )
Location:
7:27375810-27376798 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.44 %
Coverage:
99.7 %
Frameshifts:
7
Stop codons:
2


Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase A chain [Source:RefSeq peptide;Acc:NP_001138352]

Genomic region (view in browser)





>retro_ecab_924
AAGTCCAATATGGCAACTCTCAAGGACCAGCTGATTCAGAATCTTGTTAAGGAAGAACAC
ACTCCCCAGAATAAGATTACAGTTGTTGGGGTTGGTGCTGTTGGCGTGGCCTGTGCCACC
AGTCTCTTCCTCAGAACTTGGCCGATGACTTGCTCTTGTTCATGTCACTGAAGACAAATT
GAAGGGAGAGATGACAGATCTCCAGCATCTTTTTCCTTAGAACACCAAAAATTGTCTCTG
GCAAAGACTTTAATGTGACTGCACGCTCCGAGCTGGTTATTATCACAGCTGGGGCATGTC
AGCAGGAGGGAGAAAGCCATCTTAATTTGGTCCAGCGTAACGTGAACACCTTTAATTCAT
CATTCCTAATATTGTAAAATAAAGCCTCAACTGCAAGTTGCTTCTTGTTTCCAATCCAGT
GGATATCTTGACCTATGTGGCTTGGAAGATAAGCGGCTTTCCCAAAAACTGTTTATTGGA
AGTAATTCCAACCTGGATTCAGCCCAGGTCCATTGCCCAATGAGGGAAAGGCTGGGAGTT
CACCCATTAAGCTGTTCTGGGCGGACCCTTGGGGAGCCTGGAGATGCTAGTGTATGGAGT
GGGATGAATGTGGCTGGTGTCTCCCTGAAGTGTCTGCACCCGGGTTTAGGCGTTGATACA
GGTAAGGAACGTCGGCAAGAGAGTCACAAACAGGGAGCTGACACTGCTCATGAGGTGCTC
AACCTGAAGGGCTGCACATCCTGGGCCACTGGACTGTCTGTGGCAGATTTGGCAGGAAGC
ATAATGAAGAATCTTAGGTGGTGCATCCAATTTCCACTATGATTAAGGGTCTCTATGGAA
TATAAGATGATGTCTTCCTTAGTGTGCCTTGCATCTCGGGACAGAATGGAATCTCAGGCC
TGGTGAAGGCAGCTCTGACTCCTGAGGAGGAGGCCCATTTGAAGAAGAGGGCAGACACAC
TTTGGGGGTCCAAAAAGAGCTGCACTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSKMATVKDQLIQNLLKEEHVPQNKITVVGVGAVGMACAISILMK-DLADE-LALVDVIEDKLKGEMMDLQHGSLF-LRTPKIVSGKDYSVTAHSKLVII
KS.MAT.KDQLIQNL.KEEH.PQNKITVVGVGAVG.ACA.S......LAD..LALV.V.EDKLKGEM.DLQH..LF.LRTPKIVSGKD..VTA.S.LVII
Retrocopy
KSNMATLKDQLIQNLVKEEHTPQNKITVVGVGAVGVACATSLFLR/NLADD/LALVHVTEDKLKGEMTDLQH--LF\LRTPKIVSGKDFNVTARSELVII


Parental protein
TAGARQQEGESRLNLVQRNVNIFK-FIIPNVVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRV-IGSGCNLDSARFRYLMGERLGVHPLSCHGWILGE
TAGA.QQEGES.LNLVQRNVN.F..FIIPN.VK.S.NCKLL.VSNPVDILTYVAWKISGFPKN...IGS..NLDSA.....M.ERLGVHPLSC.G..LGE
Retrocopy
TAGACQQEGESHLNLVQRNVNTFN/FIIPNIVK*SLNCKLLLVSNPVDILTYVAWKISGFPKNCL/IGSNSNLDSAQVHCPMRERLGVHPLSCSGRTLGE


Parental protein
HGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLR-RVHPISTMIKGLYGIKEDVFLSV
.GD.S..VWSG.NVAGVSLK.LHP.LG.D..KE...E.HKQ..D.A.EV..LKG.TSWA.GLSVADLA.SIMKNLR..VHPISTMIKGLYGI..DVFLSV
Retrocopy
PGDAS--VWSGMNVAGVSLKCLHPGLGVDTGKERRQESHKQGADTAHEVLNLKGCTSWATGLSVADLAGSIMKNLR/VVHPISTMIKGLYGI*DDVFLSV


Parental protein
PCILGQNGISDVVKVTLTPEEEARLKKSADTLW-GIQKELQF
PCI.GQNGIS..VK..LTPEEEA.LKK.ADTLW.G.QKEL.F
Retrocopy
PCISGQNGISGLVKAALTPEEEAHLKKRADTLW/GVQKELHF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide