RetrogeneDB ID:
retro_ecab_925
Organism:
Horse ( Equus_caballus )
Location:
7:28900680-28901348 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.19 %
Coverage:
92.53 %
Frameshifts:
5
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_925
GATATGAAGAACACAATTAATGAGATAAAAAATAATCTAGAATCCATAAAAAATAGATTT
GACATTATGAAGGACAGAATTAGTGATTGAGAGGATAGAAATATAGAAATGCTTCAGGTG
GAGGAGAAGAGAGAACTAAGATTTTAACAAAATGAAGAAATTCTTTGAGAAATATCTGAT
TCAATCAGGAAAAGCAACATGAGAATTATAGGTATTCAAGAGGGAGAAAGGAGCAGGGAG
CTTGTTCAAAGAAATAATAGCTGAGAACTTTGCCAAACCTGGGGAAGTAACTGGACTTAC
AAGTACATAAAACAATAGAACTCCTAAGTATATCAATGTAAAAACACCTTCTCTAAGGCA
TATACTATTAAAACTGGCAAAAGCCAATGACAAAGAAAAAATATTAAGGGCAGCAAGGCA
GAAGAAAATAACCTACAATGGGACTCCTATCAGGCTTTCAGTGGATTCCTTGGCAGAAAC
CTTACAGGCTAGGAGAGAATGGAATGGTATATTCAAAATACTGAAAGCCAAAAACTTTCA
GCCCAGAATGCTTTATCCAGTGAAACTAACCCTCAGATACAGTGGAGAAATAAAAACTTC
CCAGATAAACAAAAGCTGAGGGAGTTCATTGCCACTAGACCTCCTTACAAGAAAAAATGA
AAGAAGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EMKNTTLEMKSSLERLNSRVSDTHEQMSEIDERLEEISQAEQKKEKRIRQNENSLRELWDNIKCTNIRFIGVPEGEERDKEAENR-VAENF-PNLKKETD
.MKNT..E.K..LE....R........S....R..E..Q.E.K.E.R..QNE..L.E..D.I...N.R.IG..EGE...........AENF.PNL.K..D
Retrocopy
DMKNTINEIKNNLESIKNRFDIMKDRISD*EDRNIEMLQVEEKRELRF*QNEEIL*EISDSIRKSNMRIIGIQEGERSRELVQRN\IAENF\PNLGK*LD


Parental protein
IHIQEA-QRTPKKISPKRATPRHIIIKISKMNDKERIPRAARQKKISYKGTPIRLSVHFSTETLQARRDWNDIFKTLKDKNLQPRILYPAKIFFRYEGEI
........RTPK.I..K....RHI..K..K.NDKE.I.RAARQKKI.Y.GTPIRLSV....ETLQARR.WN.IFK.LK.KN.QPR.LYP.K...RY.GEI
Retrocopy
LQVHKT/NRTPKYINVKTPSLRHILLKLAKANDKEKILRAARQKKITYNGTPIRLSVDSLAETLQARREWNGIFKILKAKNFQPRMLYPVKLTLRYSGEI


Parental protein
-KSFPDNQKLRDFVATSPP-LQEILKKA
.K.FPD.QKLR.F.AT.PP.LQE..K.A
Retrocopy
/KNFPDKQKLREFIATRPP/LQEKMKEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide