RetrogeneDB ID:
retro_ecab_926
Organism:
Horse ( Equus_caballus )
Location:
7:32742626-32742932 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.37 %
Coverage:
57.3 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L11 [Source:HGNC Symbol;Acc:10301]

Genomic region (view in browser)





>retro_ecab_926
GCCAAGGCAGAAGAAATCTTGGAGATAGTTCTGAAGGTGCGAGAATGCAAGTTAAGAAAA
AATAACTTCTCAAACATTGGAAACTTTGGTTTTGGGCTTCAGGAACACATTGATCTGGGC
ACCAAATATGACCCAAGCACTGGTATCTACAGCCTGGACTTCTTCGTGGAGCTGGGTAAG
CCAGATTTCAGCATCGCAGACAAGCAGCACAGGACAGGCTGCATTGGAGCCAAACACAGA
ATCAGCAAGGAGGCGGCCATGCTCTGGTTCCAGCAGAAGTATAATGGGATCATCCTTCCT
GGCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.05
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILP
AKAEEILE..LKVRE..LRKNNFS..GNFGFG.QEHIDLG.KYDPS.GIY.LDF.V.LG.P.FSIADK..RTGCIGAKHRISKE.AM.WFQQKY.GIILP
Retrocopy
AKAEEILEIVLKVRECKLRKNNFSNIGNFGFGLQEHIDLGTKYDPSTGIYSLDFFVELGKPDFSIADKQHRTGCIGAKHRISKEAAMLWFQQKYNGIILP


Parental protein
GK
GK
Retrocopy
GK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide