RetrogeneDB ID:
retro_ecab_929
Organism:
Horse ( Equus_caballus )
Location:
7:52143086-52143484 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.7 %
Coverage:
66.83 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_929
CACTTCCCAAAATTGGAGAAGGAGCTGGAATTACATGTAAATGAAGACAATAGAACTACT
AATTACATCAATGTGGAAAGACCTTCTCCAAGGCATATATTAGTAAAGCTGTCAAAAGTC
AATGACAAAGAAAAAATATTAAGTGTATCCAGGCAAAAGAAAATAACCTACAAACGAACT
CCTATCAGACTTTCATTGGATTTCCCAGCAGAAAACTTACAGGCTAAGAGAGTGGAATGA
TCTATTAAAAATTCTGAAAGATAAAAACTTTCAGCCAAGAATACTATACCCAGTGAAAAT
ATCCTTCAGATATGATGGAGAAATAAAAACTTTCCCAGATAAACAAAAGCTGAGGGGTGT
TCATCACCATGAGATCTCCCATAAAAGATTTGATTAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADF-SQTVQTRREWNDIIKILKYKNYPPRILYPV
.F..L.K.LE..V.E.NRT.NYINVERPSPRHILVKL.K...KE.I.....RQKKITYK..PIRLS.DF..Q.....REWND..KILK.KN..PRILYPV
Retrocopy
HFPKLEKELELHVNEDNRTTNYINVERPSPRHILVKLSKVNDKEKILS-VSRQKKITYKRTPIRLSLDF\QQKTYRLREWNDLLKILKDKNFQPRILYPV


Parental protein
KLSFRYGREIKAFQDKQKLR-EFITTRPPLQEMMK
K.SFRY..EIK.F.DKQKLR..FIT.R.P.....K
Retrocopy
KISFRYDGEIKTFPDKQKLR\VFITMRSPIKDLIK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide