RetrogeneDB ID:
retro_ecab_930
Organism:
Horse ( Equus_caballus )
Location:
7:53220165-53220475 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.52 %
Coverage:
52.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CRLS1
Parental gene aliases:
No gene alias available
Parental gene description:
cardiolipin synthase 1 [Source:HGNC Symbol;Acc:16148]

Genomic region (view in browser)





>retro_ecab_930
CCACTTGTTGATAAAATACCTATTTGTACCACATACATTAGCTTGACCTATGCAGATCTT
AGTCCAGCTCCACTTACTTCTGTGATAGTTTCAAAAGATGCAATGCTGACTGCTGTCATT
TTACCTCAGATATTGAACTCTTCCAAAACTGAGAGAACTTGCTAAGTATTTCAATCCTTG
CTGTGCCACTGCTAAATTAAAACCAGCCTTCATCAGCAAGGTAAACACAGCAGTCCAGTT
AATCTTGATGACAGCTTCTTTGGTAGCTCTGGTTTTCAATTATGCTGACAGTATTTATCG
TCAGGTAATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PLADKILISVLYVSLTYADLIPVPLTYMIISRDVMLIAAV-FYVRYRTLPTPRTLSKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYADSI
PL.DKI.I...Y.SLTYADL.P.PLT..I.S.D.ML..AV.FY.RY.TLP..R.L.KYFNPC.ATA.LKP.FISKVNTAVQLIL..ASL.A.VFNYADSI
Retrocopy
PLVDKIPICTTYISLTYADLSPAPLTSVIVSKDAML-TAV\FYLRY*TLPKLRELAKYFNPCCATAKLKPAFISKVNTAVQLILMTASLVALVFNYADSI


Parental protein
YLQIL
Y.Q..
Retrocopy
YRQVI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide