RetrogeneDB ID:
retro_ecab_931
Organism:
Horse ( Equus_caballus )
Location:
7:54763963-54765145 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.75 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
eca-mir-492-1
Parental gene aliases:
No gene alias available
Parental gene description:
eca-mir-492-1 [Source:miRBase;Acc:MI0012676]

Genomic region (view in browser)





>retro_ecab_931
ATGACTTCCTACAGCTATCGCCAGTCCTCGGCCACCTCGTCCTTCGGGGGCCTGGGCAGT
GGCTCCCTGCGCTTCGGGGCCGGAGGCACCTTCCGCGCGCCCAGCATCCACGGGGGCTCG
GGCGGCCGCGGCGTGTCGGTGTCCTCTGCCCGCTTCGTGACCTCGTCCTCCTCCGGGAGC
TACGGCGGTGGCTATGCGGGCACCCTGGCCGGGTCCGACGGGCTGCCGGCGGGCAACGAG
AAGGAGACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCC
CTGGAGCAGGCCAACGGCGACCTGGAGGTGAAGATCCGCGACTGGTACCTGAAGCAGGGG
CCCGGGCCCGCCCGCGACTACAGCCACTACTTCAAGACCATCGAGGAGCTGCGGGACAAG
ATTCTTGGGGCCACCATTGAGAACTCCAAGATTGTTCTGCAGATCGACAATGCCCGTCTG
GCTGCAGATGATTTCCGAACCAAGTTCGAGACTGAGCAGGCTCTGCGCTTGAGTGTGGAG
GCCGACATCAATGGCCTGCGCAGGGTGCTAGACGAGCTGACCCTGGCCAGGACTGACCTG
GAGATGCAGATTGAAGGCCTGAAGGAGGAGCTGGCCTACCTGAAGAAGAACCACGAGGAG
GAAATCAGTGTCTTGAGGGGCCAGGTGGGTGGCCAGGTCACTGTGGAGGTGGATTCCGCT
CCAGGCATTGACCTAGCCAAGATCCTGAGCGACATGAGAAGCCAATATGAGGTCATGGCT
GAGAAGAACAGGAAGGATGCTGAAGCCTGGTTCACCACCAAGACTGAGGAGCTGAACCGG
GAGGTCGCTGGCCACACGGAGCAGCTGCAGATTAACAAGACGGAGATCACCGACCTGCGG
CGCACCCTCCAGGGCCTGGAGATCGAGCTGCAGTCTCAGCTCAGCATGAAAGCCGCCCTG
GAAGGCACGCTGGCGGAAACGGAGGCTCGCTTCGGAGCTCAGCTGGCACAGATCCAGGCG
CTGATCAGTAGCATCGAAGCCCAGCTGAGTGACGTGCGTGCTGACACCGAGCGGCAGAAC
CAGGAGTACCAGCTGCTCCTGGACGTCAAGACTCGGCTGGAGCAGGAGATCGCCACCTAC
CGAAGCCTGCTGGAGGCCCAGGACGTCACCCATCAAATCGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 4.1
SRP021940_placental_villous 98.86
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTSYSYRQSSATSSFGGLGSGSLRFGAGGNFRAPSIHGGSGGRGVSVSSARFVTSSSSGSYGGGYAGTLAGSDGLPAGNEKETMQNLNDRLASYLDKVRA
MTSYSYRQSSATSSFGGLGSGSLRFGAGG.FRAPSIHGGSGGRGVSVSSARFVTSSSSGSYGGGYAGTLAGSDGLPAGNEKETMQNLNDRLASYLDKVRA
Retrocopy
MTSYSYRQSSATSSFGGLGSGSLRFGAGGTFRAPSIHGGSGGRGVSVSSARFVTSSSSGSYGGGYAGTLAGSDGLPAGNEKETMQNLNDRLASYLDKVRA


Parental protein
LEQANGDLEVKIRDWYLKQGPGPARDYSHYFKTIEELRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDL
LEQANGDLEVKIRDWYLKQGPGPARDYSHYFKTIEELRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDL
Retrocopy
LEQANGDLEVKIRDWYLKQGPGPARDYSHYFKTIEELRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDL


Parental protein
EMQIEGLKEELAYLKKNHEEEISVLRGQVGGQVTVEVDSAPGIDLAKILSDMRSQYEVMAEKNRKDAEAWFTTKTEELNREVAGHTEQLQINKTEITDLR
EMQIEGLKEELAYLKKNHEEEISVLRGQVGGQVTVEVDSAPGIDLAKILSDMRSQYEVMAEKNRKDAEAWFTTKTEELNREVAGHTEQLQINKTEITDLR
Retrocopy
EMQIEGLKEELAYLKKNHEEEISVLRGQVGGQVTVEVDSAPGIDLAKILSDMRSQYEVMAEKNRKDAEAWFTTKTEELNREVAGHTEQLQINKTEITDLR


Parental protein
RTLQGLEIELQSQLSMKAALEGTLAETEARFGAQLAQIQALISSIEAQLSDVRADTERQNQEYQLLLDVKTRLEQEIATYRSLLEAQDVTHQIV
RTLQGLEIELQSQLSMKAALEGTLAETEARFGAQLAQIQALISSIEAQLSDVRADTERQNQEYQLLLDVKTRLEQEIATYRSLLEAQDVTHQIV
Retrocopy
RTLQGLEIELQSQLSMKAALEGTLAETEARFGAQLAQIQALISSIEAQLSDVRADTERQNQEYQLLLDVKTRLEQEIATYRSLLEAQDVTHQIV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide