RetrogeneDB ID:
retro_ecab_933
Organism:
Horse ( Equus_caballus )
Location:
7:61487652-61488219 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.96 %
Coverage:
56.25 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase A chain [Source:RefSeq peptide;Acc:NP_001138352]

Genomic region (view in browser)





>retro_ecab_933
ATATCTTATGTAGCCTGGAAATTGAGTGTATTTCCCAAAAACTGTGTTATTGGAAGTGGC
TATAATCTAAACACTGCCTGTTTCCGTTTCTTGATTGGGCAAAAGCTTGGTATCCACTCT
GAAAGCTGTCATGGGTGCATCCTTGGAGAGCATGGAGACTCAAGTATCCCTGTGTGGAGT
GGAGTTAATATTGCTGGTGTCCCTCTGAAGGATCTGAACTTGGATATAGGAACTGATAAG
GATCCTGAGCAGTGGAAAACTATCCACAAAGAAATGATTACCAGTGCCTATGAGATTATT
AAAATGCAAGGCCATCCTTCTTGGGCCGTTGACCTATCTGTAGCTAATTTAACACAAAGT
ATTTTGAAGAATCTTGGAAGAGTGCATCTAGCTTCCACCATAATTGAGGACCTGTATGGA
ATAAATGAAGAAATAATCTTCAGTGTTCTTTGTATCCTGGGAGAGAATAGTATTACAGAC
TTTATAAAGGTAAGGCTAAACCCTGAAGGGGAGGCCTGTTTAAAAAAGAGTGCAGAAACG
CTTAGGGAAATTCAGAAGGAGCTCAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKEVHKQVVDSAYEVI
..YVAWK.S.FPKN.VIGSG.NL..A.FR.L.G..LG.H..SCHG.ILGEHGDSS.PVWSGVN.AGV.LK.L....GTD.D.E.WK..HK....SAYE.I
Retrocopy
ISYVAWKLSVFPKNCVIGSGYNLNTACFRFLIGQKLGIHSESCHGCILGEHGDSSIPVWSGVNIAGVPLKDLNLDIGTDKDPEQWKTIHKEMITSAYEII


Parental protein
KLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQ
K..G..SWA..LSVA.L..SI.KNL.RVH..ST.I..LYGI.E....SV.CILG.N.I.D..KV.L.PE.EA.LKKSA.TL..IQKEL.
Retrocopy
KMQGHPSWAVDLSVANLTQSILKNLGRVHLASTIIEDLYGINEEIIFSVLCILGENSITDFIKVRLNPEGEACLKKSAETLREIQKELK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide