RetrogeneDB ID:
retro_ecab_934
Organism:
Horse ( Equus_caballus )
Location:
7:66274912-66275602 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
51.91 %
Coverage:
98.31 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_934
AATAAGAATTTGAACAAAGAGAGAGAAAATATAACAAAGCACCAAACAGAAATCACAGAG
CTAAGAAATACAGTAACGGAACTGAAAAATACAGTAGAGGGGTTCAAAAGCAGATTAGAT
GAAGCAGAAGAAAGGATCACCAAACTCAAAGACAGGGCGGTGGAATTCATCCAATCAGAA
CAACAAAAAGAAAAAAGAATGAAAAAGAGTGAAAACAGCTTAAGGGACTTAAGGCACAAT
ATCAAATGGACTAATATTCACCATATAGAGGCCCTAGAAGGAGAAGAGAGAGAGAAAGGG
GCAGAAAACTTATTTGAAAAAATAATGGCAGAAAATTTCTTTATTCTGGGGAAGGAAACA
GACAACCACATCCAGGAAGCTCAGAAAGTTCCAAATAAGATGAATGTAAAGAGACCCACA
CTAAGACACATAATTAAATTGTCAAAAGTTAAAGACAAGGAACCTTAAAAGCAGCTAGAG
AAAAACAACTTGTTATGTACAAAGGAGCCCCCATAAAAAATCAGCAGATTTTTCAGCAGC
AATTTTGCAAGCCAGAAGGAAATGGCATGATACATTCAAAGGGCTGAAAGAAAAAACTGC
CAACCAAGAATGCTCTACCTGGCAATGCTGTCCTTCAGAACTGAAGAGGAGATAACGAGT
TTTCCAGACAAGCAAAAGCTGAAGGAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.07
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SENFSKETENIRKYQIEVTELKNTPTELKNTIEGFKSRLDDTEERISGLEDRAVELIQSELSTQNRLEDLAPSPKDCADSMRKCSIRTIGVQEGEEKEDG
..N..KE.ENI.K.Q.E.TEL.NT.TELKNT.EGFKSRLD..EERI..L.DRAVE.IQSE............S..D.........I..I...EGEE.E.G
Retrocopy
NKNLNKERENITKHQTEITELRNTVTELKNTVEGFKSRLDEAEERITKLKDRAVEFIQSEQXXXXXXXXXXXSLRDLRHNIKWTNIHHIEALEGEEREKG


Parental protein
AESVLKEIIAENFPNLGDEREMCVEEVFRSPRYVNVKRPTARHIVVKLAKMNDKE-RILRAARLKKITYKGTPI-RLSVDFSAETLQARTDWNDIFKTLK
AE.....I.AENF..LG.E......E....P...NVKRPT.RHI..KL.K..DKE.....A.......YKG.PI...S.DFSA..LQAR..W.D.FK.LK
Retrocopy
AENLFEKIMAENFFILGKETDNHIQEAQKVPNKMNVKRPTLRHI-IKLSKVKDKE/TLKAAREKQLVMYKGAPI/KKSADFSAAILQARRKWHDTFKGLK


Parental protein
D-KNLQPRILYPAKISFRYEGEIKSFPEKQKLRDF
..KN.QPR.LY.A..SFR.E.EI.SFP.KQKL..F
Retrocopy
E/KNCQPRMLYLAMLSFRTEEEITSFPDKQKLKEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide