RetrogeneDB ID:
retro_ecab_936
Organism:
Horse ( Equus_caballus )
Location:
7:73540213-73540456 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.66 %
Coverage:
80.39 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
ISCA1
Parental gene aliases:
No gene alias available
Parental gene description:
iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660]

Genomic region (view in browser)





>retro_ecab_936
ACATCTCTGGCGGCAAACAAGATGAAATAGCTACTTAGAGATGAACTTGAACACGTGGGT
GTGAAATTTGGTGTCTACACTGAGGATCGTAATGGCCTCTCTTATGCTTTAGAATCTATG
AAGACCAGAGAAGATCCTGATGAAGTTGTGCAAGATGAAATCAGAGTGTTCATAAAAAGG
AAGCATAGCTGATACTTTCAGAAATAGAAAGTAGACTATGTTCAAGGCAAATTATCTGGT
GAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSE
T..A.NK.K.LL.D..EHVGVK.GV.T...NGLSY.LE..KT..D.D.EVVQD..RVFI..K..........DYV..KLS..
Retrocopy
TSLAANKMK*LLRDELEHVGVKFGVYTEDRNGLSYALESMKTREDPD-EVVQDEIRVFIKRKHS*YFQK*KVDYVQGKLSGD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide