RetrogeneDB ID:
retro_ecab_938
Organism:
Horse ( Equus_caballus )
Location:
7:77471022-77471420 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.74 %
Coverage:
97.04 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
FABP5
Parental gene aliases:
No gene alias available
Parental gene description:
fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560]

Genomic region (view in browser)





>retro_ecab_938
CAGCAGCTGGGAGAACGATGGCACCTGGTGGAGAGCCTAGACTTTGCTGAATACATGAAG
GCAGCAGGCATGGGAATGGCTCTGTGAAAAATGGGTGCAGTGGCCAAACCAGATTATGTC
ATCTCTGCTGATGACAAGAGCCTTACCATAAAAACTACTAAAAGCACTTTCAAAACAATA
CAGTTTTCTTGTAAACTTGGAGAGGAGTTGAAGAAACTACAGTTGGTGGCAGAAACACTC
AAATCTGCAACTTTACAAACGGTGCATTGCATTTGTTCGACACTAGGAACGGGATGGGAA
AGGAAAATACAATAACAAGAAAAGTGGAAGATGGAAAATTTGTGGTGGAATGCATGACAA
GCAATATCACCAATACTAAGATTTATGAAAAAGCAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EQLVGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITSDGKNLTIKT-ESTLKTTQFSCNLGEKF-EETTADGRKTQTVCNFTDGALVQHQEWDG
.QL..RW.LVES..F.EYMK..G.GMAL.KMGA.AKPD..I..D.K.LTIKT..ST.KT.QFSC.LGE...EETT..GR.TQ..CNFT.GAL.......G
Retrocopy
QQLGERWHLVESLDFAEYMKAAGMGMAL*KMGAVAKPDYVISADDKSLTIKTTKSTFKTIQFSCKLGEEL/EETTVGGRNTQ-ICNFTNGALHLFDTRNG


Parental protein
--KESTITRKLQDGKLVVECVMNNVTCTRVYEKVE
..KE.TITRK..DGK.VVEC...N.T.T..YEK.E
Retrocopy
MGKENTITRKVEDGKFVVECMTSNITNTKIYEKAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide