RetrogeneDB ID:
retro_ecab_939
Organism:
Horse ( Equus_caballus )
Location:
7:79460420-79460972 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.33 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_939
AAAAGGGCTCCCTACTCACTTGACCCAGAAAACCCTACAAAATCATGCAAATCAAGAGAT
TCAAATCTTCATATTCATATTAAGAACACTGTGAAACTTCCCAGGCCATAAAGGGTGTGC
ATATCTGAAAAGCCCCCAAGTATCTGAAGGATGTCACTTGAAAGAAGCAGCATGTGCCAT
TCTGTCATCACAATGATGGAGTTGGTAGGCGCGCCCAGGCCAAGCAGTGGGGCTGGACAT
AGGCTCGATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTGAAAAATGCAGAGT
AATGCTGAACTTAAGGGCTTGGATGTAGATTCTCTGGTTAGTGAGCACATCCAGGTGAAC
AAAGCCCCCAAGATGCGGCGCAGAACCTACAGAGCTCCCGGGAGGACTAACCCCTACGTG
AGCCGGCCCTGCCACACTGAGATGGCCTTTCCTGAAAAAGAGCAGATCGTTCCTAGACCG
GAAGAGGAGGTTGCAGAGAAGAAAGGGATATCCCAGAAGAAACTGAAGAAACAAAAACTT
ATGGCCTGGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.42

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTR-ETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRW-PKKSAEFLLHMLKN
K...YSLDPENPTKSCKSR.SNL..H.KNT..ET.QAIKG.HI.KA.KYLKDVT.KKQ.VPF...N.GVGR.AQAKQWGWT..RW.PK....F.....K.
Retrocopy
KRAPYSLDPENPTKSCKSRDSNLHIHIKNTV/ETSQAIKGVHI*KAPKYLKDVT*KKQHVPFCHHNDGVGRRAQAKQWGWT*ARW\PKRVLNFCCTC*K-


Parental protein
AESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE
..SNAELKGLDVDSLV.EHIQVNKAPKMRRRTYRA.GR.NPY.S.PCH.EM...EKEQIVP.PEEEVA.KK.ISQKKLKKQKLMA.E
Retrocopy
MQSNAELKGLDVDSLVSEHIQVNKAPKMRRRTYRAPGRTNPYVSRPCHTEMAFPEKEQIVPRPEEEVAEKKGISQKKLKKQKLMAWE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide